Variant report

Variant	rs9396069
Chromosome Location	chr6:55104436-55104437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55103505..55105321-chr6:55107374..55109522,2	MCF-7	breast:
2	chr6:54740124..54741737-chr6:55103503..55105754,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12055777	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12055778	1.00[ASN][1000 genomes]
rs3122160	0.92[CHB][hapmap]
rs3122162	0.91[CEU][hapmap]
rs3122164	0.95[CEU][hapmap]
rs3122167	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs3134711	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4074181	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4075174	0.86[ASN][1000 genomes]
rs4311511	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4496804	0.84[CHB][hapmap]
rs4530845	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4631286	0.81[YRI][hapmap]
rs56843381	1.00[ASN][1000 genomes]
rs62416801	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62416821	0.96[ASN][1000 genomes]
rs6930360	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7754675	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7771240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9349768	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9349771	0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs9349772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349773	0.96[ASN][1000 genomes]
rs9349774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357849	0.81[YRI][hapmap]
rs9357850	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9357851	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9357852	0.99[ASN][1000 genomes]
rs9357853	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357854	0.96[ASN][1000 genomes]
rs9357855	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9367624	0.80[YRI][hapmap]
rs9367625	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9367626	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9367627	0.96[ASN][1000 genomes]
rs9370407	0.96[ASN][1000 genomes]
rs9382470	0.81[ASN][1000 genomes]
rs9382471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9382472	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396062	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9396070	1.00[ASN][1000 genomes]
rs9396074	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396075	0.96[ASN][1000 genomes]
rs9464215	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9475206	0.97[YRI][hapmap]
rs9475208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475210	0.96[YRI][hapmap]
rs9475211	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9475214	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55102400-55104600	Enhancers	Fetal Heart	heart
2	chr6:55104200-55109000	Weak transcription	Fetal Intestine Small	intestine

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