Variant report

Variant	rs9396074
Chromosome Location	chr6:55118693-55118694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12055777	0.97[ASN][1000 genomes]
rs12055778	0.97[ASN][1000 genomes]
rs3134711	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074181	0.94[ASN][1000 genomes]
rs4075174	0.84[ASN][1000 genomes]
rs56843381	0.97[ASN][1000 genomes]
rs62416801	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62416821	0.99[ASN][1000 genomes]
rs6930360	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741664	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349771	0.97[ASN][1000 genomes]
rs9349772	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349773	0.99[ASN][1000 genomes]
rs9349774	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357850	0.97[ASN][1000 genomes]
rs9357851	0.97[ASN][1000 genomes]
rs9357852	0.96[ASN][1000 genomes]
rs9357853	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357854	0.99[ASN][1000 genomes]
rs9357855	0.99[ASN][1000 genomes]
rs9367625	0.95[ASN][1000 genomes]
rs9367626	0.99[ASN][1000 genomes]
rs9367627	0.99[ASN][1000 genomes]
rs9370407	0.99[ASN][1000 genomes]
rs9382471	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9382472	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396069	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396070	0.97[ASN][1000 genomes]
rs9396075	0.99[ASN][1000 genomes]
rs9464215	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9475211	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55115800-55119200	Weak transcription	H9 Cell Line	embryonic stem cell

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