Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011277	0.81[ASN][1000 genomes]
rs1016719	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1925166	0.81[ASN][1000 genomes]
rs1925174	0.81[ASN][1000 genomes]
rs1925175	0.81[ASN][1000 genomes]
rs1998699	0.81[ASN][1000 genomes]
rs2235735	0.82[EUR][1000 genomes]
rs3823468	0.81[EUR][1000 genomes]
rs4374814	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4612164	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715576	0.85[EUR][1000 genomes]
rs4715580	0.81[ASN][1000 genomes]
rs6926301	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6927562	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296827	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357887	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370479	0.85[EUR][1000 genomes]
rs9370482	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396173	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475556	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475558	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9475564	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475565	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55929000-55956200	Weak transcription	Aorta	Aorta
3	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
4	chr6:55952600-55955800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:55952800-55955800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:55952800-55956000	Weak transcription	HUVEC	blood vessel
7	chr6:55953800-55957600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:55954000-55955200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:55954000-55955600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:55954000-55955800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:55954000-55956000	Weak transcription	Left Ventricle	heart
12	chr6:55954000-55956200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:55954000-55956200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:55954000-55956600	Active TSS	Fetal Heart	heart
15	chr6:55954000-55957600	Weak transcription	Fetal Lung	lung
16	chr6:55954400-55956600	Active TSS	Right Atrium	heart
17	chr6:55954800-55956600	Active TSS	Right Ventricle	heart
18	chr6:55954800-55960400	Weak transcription	Fetal Kidney	kidney

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