Variant report

Variant	rs9396201
Chromosome Location	chr6:56177573-56177574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56175903..56178610-chr6:56182737..56184492,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12110798	0.82[CEU][hapmap]
rs2397211	0.85[CEU][hapmap]
rs4075390	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128443	0.93[EUR][1000 genomes]
rs4302670	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348306	0.92[ASN][1000 genomes]
rs4401668	0.92[ASN][1000 genomes]
rs4432980	0.92[ASN][1000 genomes]
rs4455670	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4596476	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4602722	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712122	0.83[YRI][hapmap]
rs4712129	1.00[ASN][1000 genomes]
rs4715608	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715615	1.00[ASN][1000 genomes]
rs6459143	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6904902	0.85[CEU][hapmap]
rs6908492	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6916683	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6918390	1.00[ASN][1000 genomes]
rs6918405	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6918460	1.00[ASN][1000 genomes]
rs6918489	1.00[ASN][1000 genomes]
rs6918786	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6924236	0.94[ASN][1000 genomes]
rs6924834	0.83[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6925039	1.00[ASN][1000 genomes]
rs6931381	0.85[CEU][hapmap]
rs7748964	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7755746	0.92[ASN][1000 genomes]
rs7766466	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766685	1.00[ASN][1000 genomes]
rs9349811	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs9357903	0.92[ASN][1000 genomes]
rs9357904	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357905	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357908	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367680	0.92[ASN][1000 genomes]
rs9370507	0.88[ASN][1000 genomes]
rs9370508	0.92[ASN][1000 genomes]
rs9370509	0.92[ASN][1000 genomes]
rs9370510	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs9370520	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382616	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396195	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs9396200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475661	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689751	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56174600-56180000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:56175000-56177800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56177200-56177800	Active TSS	Fetal Brain Male	brain
4	chr6:56177200-56178800	Enhancers	Fetal Lung	lung

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