Variant report

Variant	rs939632
Chromosome Location	chr12:51099186-51099187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51074554..51076965-chr12:51096673..51099522,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	1.00[EUR][1000 genomes]
rs12302812	1.00[EUR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.86[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1866422	0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs2253376	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	1.00[EUR][1000 genomes]
rs2468378	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	1.00[EUR][1000 genomes]
rs2684896	1.00[EUR][1000 genomes]
rs2684897	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs2684904	1.00[EUR][1000 genomes]
rs2684905	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs2684907	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2700481	1.00[EUR][1000 genomes]
rs2700483	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	1.00[YRI][hapmap]
rs2731437	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs2731441	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	1.00[EUR][1000 genomes]
rs2731446	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs4259895	1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768908	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768910	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs6580762	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7312349	1.00[EUR][1000 genomes]
rs7313783	1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939634	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
4	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
14	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
15	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr12:51076600-51102600	Strong transcription	Adipose Nuclei	Adipose
20	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:51084600-51102400	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr12:51084600-51106000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:51086200-51109800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr12:51086400-51099600	Strong transcription	Thymus	Thymus
30	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr12:51086600-51106200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:51086800-51100400	Strong transcription	Left Ventricle	heart
33	chr12:51086800-51106000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr12:51086800-51106200	Strong transcription	Primary B cells from cord blood	blood
35	chr12:51087600-51099600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:51087600-51106200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:51089000-51106200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr12:51089200-51103000	Strong transcription	Fetal Lung	lung
39	chr12:51089400-51101000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:51090600-51099600	Strong transcription	Lung	lung
42	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr12:51090800-51099400	Strong transcription	Fetal Stomach	stomach
44	chr12:51091000-51102000	Weak transcription	NHDF-Ad	bronchial
45	chr12:51093000-51100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr12:51093000-51102000	Weak transcription	Fetal Heart	heart
47	chr12:51093200-51101000	Weak transcription	Colon Smooth Muscle	Colon
48	chr12:51093200-51101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr12:51093400-51100400	Weak transcription	K562	blood
50	chr12:51093400-51108200	Strong transcription	Liver	Liver

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