Variant report

Variant	rs939634
Chromosome Location	chr12:51033329-51033330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51012150..51015682-chr12:51031873..51033630,3	MCF-7	breast:
2	chr12:50897512..50899148-chr12:51031639..51034369,2	MCF-7	breast:
3	chr12:50897552..50900276-chr12:51029112..51034048,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs12367373	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.81[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1866422	0.82[YRI][hapmap]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	1.00[EUR][1000 genomes]
rs2037453	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.83[AFR][1000 genomes]
rs2253376	0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	1.00[YRI][hapmap]
rs2731437	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768908	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs4768910	1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580749	1.00[EUR][1000 genomes]
rs6580750	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	1.00[EUR][1000 genomes]
rs7133107	1.00[EUR][1000 genomes]
rs7302222	1.00[EUR][1000 genomes]
rs7309410	1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7310686	1.00[EUR][1000 genomes]
rs7312349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7314198	1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7963866	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
4	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
5	chr12:51016200-51035400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:51016600-51039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:51021000-51039800	Weak transcription	NHLF	lung
10	chr12:51021600-51041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:51021800-51034600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:51021800-51036000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:51021800-51041000	Weak transcription	Fetal Kidney	kidney
14	chr12:51021800-51041400	Weak transcription	Right Ventricle	heart
15	chr12:51022000-51033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:51022000-51036200	Weak transcription	Pancreas	Pancrea
17	chr12:51022000-51037200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:51022200-51035000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:51022400-51034000	Weak transcription	K562	blood
22	chr12:51022400-51035400	Weak transcription	Lung	lung
23	chr12:51022400-51055200	Weak transcription	Ovary	ovary
24	chr12:51022600-51035400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr12:51023000-51034400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr12:51023200-51035400	Weak transcription	Hela-S3	cervix
29	chr12:51023400-51034400	Weak transcription	Placenta	Placenta
30	chr12:51023600-51035200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:51023600-51035400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:51023800-51035200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr12:51024000-51034000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr12:51025600-51033400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:51025800-51034600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:51025800-51035600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:51026000-51035000	Weak transcription	Fetal Intestine Large	intestine
38	chr12:51026200-51034800	Weak transcription	Fetal Stomach	stomach
39	chr12:51026400-51035400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr12:51026400-51035400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:51027200-51034600	Enhancers	Brain Cingulate Gyrus	brain
42	chr12:51027600-51033800	Weak transcription	Primary B cells from cord blood	blood
43	chr12:51027600-51034600	Weak transcription	Fetal Intestine Small	intestine
44	chr12:51027800-51034400	Enhancers	Brain Hippocampus Middle	brain
45	chr12:51028400-51035200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr12:51028400-51035200	Weak transcription	HSMM	muscle
47	chr12:51028400-51035400	Weak transcription	HSMMtube	muscle
48	chr12:51028400-51035400	Weak transcription	Osteobl	bone
49	chr12:51028400-51036600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr12:51028400-51092400	Weak transcription	Gastric	stomach

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