Variant report

Variant	rs9397194
Chromosome Location	chr6:150511399-150511400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11155709	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs11155710	0.80[CEU][hapmap]
rs11755697	0.80[CEU][hapmap]
rs11759065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12195287	0.82[EUR][1000 genomes]
rs17079397	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9322250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384212	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397725	0.88[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9478551	0.81[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
3	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:150506800-150512000	Weak transcription	HMEC	breast
6	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150507600-150512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150508000-150513600	Weak transcription	Lung	lung
9	chr6:150508400-150517000	Weak transcription	K562	blood
10	chr6:150510400-150513400	Enhancers	Fetal Heart	heart
11	chr6:150510600-150512200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
13	chr6:150510800-150514800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:150511000-150513800	Enhancers	NHEK	skin
15	chr6:150511200-150511600	Weak transcription	Left Ventricle	heart
16	chr6:150511200-150513800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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