Variant report

Variant	rs9397292
Chromosome Location	chr6:150687358-150687359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11962096	0.84[EUR][1000 genomes]
rs11969964	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12208588	0.91[GIH][hapmap]
rs12530375	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1339104	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1339105	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1339106	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1339107	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1339109	0.83[ASN][1000 genomes]
rs1339110	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416481	1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap]
rs1556881	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2064213	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2076284	1.00[CEU][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs2076285	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs2076286	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2076287	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2076288	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2076289	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2076290	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2076291	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2076292	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3734734	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3823259	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs3823260	0.87[EUR][1000 genomes]
rs4407723	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4478415	0.86[MEX][hapmap]
rs5029121	1.00[CEU][hapmap]
rs57538858	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs602842	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs60702386	0.82[EUR][1000 genomes]
rs612200	0.88[ASN][1000 genomes]
rs61253143	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs617594	0.87[ASN][1000 genomes]
rs618514	0.87[ASN][1000 genomes]
rs62432478	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432481	0.90[ASN][1000 genomes]
rs62432482	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62432483	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62432484	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62432506	0.90[EUR][1000 genomes]
rs62432511	0.90[EUR][1000 genomes]
rs62432540	0.84[EUR][1000 genomes]
rs62432541	0.84[EUR][1000 genomes]
rs62432542	0.84[EUR][1000 genomes]
rs629163	0.87[ASN][1000 genomes]
rs630632	0.87[ASN][1000 genomes]
rs632337	0.87[ASN][1000 genomes]
rs632829	0.87[ASN][1000 genomes]
rs652210	0.83[ASN][1000 genomes]
rs653588	0.87[ASN][1000 genomes]
rs654101	0.87[ASN][1000 genomes]
rs654476	0.87[ASN][1000 genomes]
rs660382	0.89[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs671675	0.94[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs683255	0.89[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs6909655	0.84[EUR][1000 genomes]
rs6911086	0.91[GIH][hapmap]
rs6921360	0.84[EUR][1000 genomes]
rs73617698	0.87[EUR][1000 genomes]
rs7745569	0.90[EUR][1000 genomes]
rs7749131	0.82[ASN][1000 genomes]
rs7749894	0.83[ASN][1000 genomes]
rs7757136	0.83[ASN][1000 genomes]
rs7757456	0.83[ASN][1000 genomes]
rs7761373	0.94[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761906	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7762616	0.81[EUR][1000 genomes]
rs7763368	0.91[GIH][hapmap]
rs7768510	0.91[GIH][hapmap]
rs7770389	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7772485	0.83[ASN][1000 genomes]
rs7774077	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs9322259	0.90[EUR][1000 genomes]
rs9371429	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9371437	0.84[EUR][1000 genomes]
rs9371991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9372012	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[EUR][1000 genomes]
rs9383808	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9384388	0.85[MEX][hapmap]
rs9384445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9384466	0.83[ASN][1000 genomes]
rs9384472	0.90[EUR][1000 genomes]
rs9384473	0.90[EUR][1000 genomes]
rs9384476	0.87[EUR][1000 genomes]
rs9397302	0.90[EUR][1000 genomes]
rs9397303	0.82[CHD][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs9397937	0.83[ASN][1000 genomes]
rs9397944	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9480323	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150686400-150687800	Enhancers	Ovary	ovary
2	chr6:150687000-150687400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150687000-150687400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:150687000-150688000	Enhancers	Fetal Muscle Trunk	muscle
5	chr6:150687200-150687800	Enhancers	Fetal Muscle Leg	muscle

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