Variant report

Variant	rs9397343
Chromosome Location	chr6:151025302-151025303
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12661140	0.80[AMR][1000 genomes]
rs12663498	0.83[AMR][1000 genomes]
rs1494308	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552886	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552889	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080069	0.82[AMR][1000 genomes]
rs17080087	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080089	0.85[AMR][1000 genomes]
rs17080091	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080093	0.85[AMR][1000 genomes]
rs17080102	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57139556	0.85[AMR][1000 genomes]
rs62434120	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62434122	0.85[AMR][1000 genomes]
rs62434123	0.85[AMR][1000 genomes]
rs62434124	0.85[AMR][1000 genomes]
rs62434125	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62434129	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs654698	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557082	0.84[AMR][1000 genomes]
rs6557083	0.84[AMR][1000 genomes]
rs6919871	0.84[AMR][1000 genomes]
rs6929935	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322273	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322274	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322275	0.91[AMR][1000 genomes]
rs9322277	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322278	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
2	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:151017600-151029200	Weak transcription	Lung	lung
4	chr6:151017800-151025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:151018800-151028600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:151019000-151033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:151019000-151033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:151019000-151035200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:151020800-151025600	Weak transcription	Esophagus	oesophagus
11	chr6:151021400-151025400	Enhancers	Primary B cells from cord blood	blood
12	chr6:151021400-151026400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:151021400-151029000	Weak transcription	Left Ventricle	heart
14	chr6:151021600-151025600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:151021600-151026800	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:151021600-151033000	Weak transcription	Fetal Stomach	stomach
17	chr6:151021600-151040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:151023400-151025400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:151023600-151025400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:151024000-151025400	Weak transcription	Thymus	Thymus
21	chr6:151024000-151027600	Enhancers	Placenta	Placenta
22	chr6:151024200-151026600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:151024200-151028600	Weak transcription	Small Intestine	intestine
24	chr6:151024200-151034200	Weak transcription	Right Ventricle	heart
25	chr6:151024400-151028800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:151024400-151032800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:151024800-151027000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:151025200-151025600	Genic enhancers	Fetal Thymus	thymus
29	chr6:151025200-151025600	Enhancers	Psoas Muscle	Psoas
30	chr6:151025200-151026000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:151025200-151026200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:151025200-151026800	Enhancers	Spleen	Spleen

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