Variant report

Variant	rs9397725
Chromosome Location	chr6:150506671-150506672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:
2	chr6:150491837..150493416-chr6:150504605..150507001,2	K562	blood:
3	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11155709	0.84[EUR][1000 genomes]
rs11155710	0.83[EUR][1000 genomes]
rs11751046	0.82[EUR][1000 genomes]
rs11755697	0.82[EUR][1000 genomes]
rs11759065	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12195287	0.86[EUR][1000 genomes]
rs17079397	0.86[EUR][1000 genomes]
rs9322250	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9384212	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9397194	0.88[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9478551	0.84[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150497800-150511000	Weak transcription	NHEK	skin
2	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
4	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
5	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
8	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:150505400-150507400	Weak transcription	Colonic Mucosa	Colon
12	chr6:150505400-150508400	Enhancers	K562	blood
13	chr6:150505600-150507600	Enhancers	Fetal Intestine Small	intestine
14	chr6:150505600-150510400	Weak transcription	Right Ventricle	heart
15	chr6:150505800-150506800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:150506000-150507400	Enhancers	Fetal Intestine Large	intestine
17	chr6:150506200-150507200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:150506200-150507400	Enhancers	Left Ventricle	heart
19	chr6:150506200-150507800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:150506400-150506800	Enhancers	HMEC	breast
21	chr6:150506400-150507000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150506400-150507000	Enhancers	Esophagus	oesophagus
23	chr6:150506400-150507000	Enhancers	Lung	lung
24	chr6:150506400-150507000	Enhancers	Spleen	Spleen
25	chr6:150506400-150507200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:150506600-150506800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150506600-150507400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:150506600-150507600	Enhancers	Stomach Mucosa	stomach
29	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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