Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:150391874..150392906-chr6:150655937..150656926,3	MCF-7	breast:
2	chr6:150401151..150402465-chr6:150656027..150656922,6	MCF-7	breast:
3	chr6:150392325..150392932-chr6:150655903..150657072,4	K562	blood:
4	chr6:150401548..150402447-chr6:150655810..150657501,10	K562	blood:
5	chr6:150401003..150402693-chr6:150655609..150656984,12	MCF-7	breast:
6	chr6:150652538..150654492-chr6:150655790..150657493,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12055507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538483	0.80[ASN][1000 genomes]
rs1538484	0.90[ASN][1000 genomes]
rs1890519	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1890520	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2344747	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61650392	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs623829	0.82[ASN][1000 genomes]
rs623882	0.80[ASN][1000 genomes]
rs62434564	0.85[EUR][1000 genomes]
rs62434569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901397	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6915103	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940067	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940396	0.87[ASN][1000 genomes]
rs868247	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs884678	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884679	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9371954	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9371955	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383792	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383793	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384417	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3443867	chr6:150651959-150656557	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150649000-150656600	Weak transcription	Right Atrium	heart
3	chr6:150654200-150657200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150655000-150657400	Weak transcription	Stomach Mucosa	stomach
5	chr6:150655600-150657800	Enhancers	K562	blood
6	chr6:150656000-150656200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150656000-150656600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150656000-150658600	Enhancers	HMEC	breast

Quick Search: