Variant report

Variant	rs9397886
Chromosome Location	chr6:150657006-150657007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1112870	0.83[ASN][1000 genomes]
rs12055585	0.81[ASN][1000 genomes]
rs1591830	0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1737283	0.80[EUR][1000 genomes]
rs4368826	0.80[EUR][1000 genomes]
rs4479947	0.83[ASN][1000 genomes]
rs57111320	0.83[ASN][1000 genomes]
rs57892381	0.83[ASN][1000 genomes]
rs683810	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6919940	0.83[ASN][1000 genomes]
rs9371950	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397277	0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150654200-150657200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150655000-150657400	Weak transcription	Stomach Mucosa	stomach
4	chr6:150655600-150657800	Enhancers	K562	blood
5	chr6:150656000-150658600	Enhancers	HMEC	breast
6	chr6:150656200-150657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150656400-150658200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150656400-150658600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:150656400-150658600	Enhancers	NHEK	skin
10	chr6:150657000-150658600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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