Variant report

Variant	rs9397954
Chromosome Location	chr6:150717826-150717827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150717285..150719589-chr6:150720584..150722449,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11962096	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12530375	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1416481	0.84[AMR][1000 genomes]
rs1556881	0.80[ASN][1000 genomes]
rs2076285	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076286	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076287	0.80[ASN][1000 genomes]
rs2076288	0.80[ASN][1000 genomes]
rs2076289	0.80[ASN][1000 genomes]
rs2076290	0.80[ASN][1000 genomes]
rs2076291	0.80[ASN][1000 genomes]
rs2076292	0.80[ASN][1000 genomes]
rs3734734	0.80[ASN][1000 genomes]
rs3823259	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3823260	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4479949	0.82[ASN][1000 genomes]
rs60702386	0.82[EUR][1000 genomes]
rs62432483	0.80[AMR][1000 genomes]
rs62432484	0.80[AMR][1000 genomes]
rs62432511	0.80[ASN][1000 genomes]
rs62432540	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62432541	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62432542	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909655	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6921360	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73617698	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7762616	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7769542	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7774077	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774404	0.85[ASN][1000 genomes]
rs9322259	0.80[ASN][1000 genomes]
rs9371429	0.80[AMR][1000 genomes]
rs9371437	0.80[ASN][1000 genomes]
rs9372012	0.82[EUR][1000 genomes]
rs9383808	0.84[AMR][1000 genomes]
rs9384476	0.80[ASN][1000 genomes]
rs9397302	0.80[ASN][1000 genomes]
rs9397303	0.80[ASN][1000 genomes]
rs9397944	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150712200-150719200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150716400-150718200	Weak transcription	Liver	Liver

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