Variant report

Variant	rs9399728
Chromosome Location	chr6:102218047-102218048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102198814..102201374-chr6:102217508..102220238,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10485276	0.90[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11156157	0.91[JPT][hapmap]
rs11962789	0.82[JPT][hapmap]
rs1325060	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340266	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs1361444	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs1361445	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs1361446	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs1408768	0.90[CEU][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs1555775	0.91[JPT][hapmap]
rs1556993	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs17062480	0.82[ASN][1000 genomes]
rs1965603	0.91[JPT][hapmap]
rs2246394	0.94[JPT][hapmap]
rs2399635	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs2399636	0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2518191	0.90[JPT][hapmap]
rs2518193	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs2518198	0.91[JPT][hapmap]
rs2518200	0.87[JPT][hapmap]
rs2518201	0.91[JPT][hapmap]
rs2518202	0.87[JPT][hapmap]
rs2518203	0.91[JPT][hapmap]
rs2518206	0.91[JPT][hapmap]
rs2518266	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs2518267	0.91[JPT][hapmap]
rs2518268	0.91[JPT][hapmap]
rs2764218	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs2764220	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs2764222	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs2764224	0.82[JPT][hapmap]
rs2764225	0.90[JPT][hapmap]
rs2764226	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs2764228	0.82[CEU][hapmap];0.95[JPT][hapmap]
rs2764230	0.87[JPT][hapmap]
rs2764231	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs2764233	0.87[JPT][hapmap]
rs2764236	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs2791812	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs2791817	0.86[JPT][hapmap]
rs2791818	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs2791819	0.91[JPT][hapmap]
rs2791821	0.82[JPT][hapmap]
rs2791823	0.86[JPT][hapmap]
rs2791827	0.91[JPT][hapmap]
rs2791832	0.91[JPT][hapmap]
rs2791834	0.84[JPT][hapmap]
rs2791837	0.87[JPT][hapmap]
rs2852573	0.82[JPT][hapmap]
rs2852574	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs2852576	0.90[JPT][hapmap]
rs4839802	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs4839803	0.86[JPT][hapmap]
rs4839804	0.86[JPT][hapmap]
rs4840195	0.89[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4840196	0.89[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4840197	0.90[JPT][hapmap]
rs4840198	0.82[JPT][hapmap]
rs4840199	0.82[JPT][hapmap]
rs6922753	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs7749469	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7754022	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7775085	0.86[ASN][1000 genomes]
rs7775876	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322609	0.90[JPT][hapmap]
rs9322611	0.87[JPT][hapmap]
rs9322613	0.82[JPT][hapmap]
rs9377306	0.90[CEU][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9377307	0.84[ASN][1000 genomes]
rs9377308	0.90[JPT][hapmap]
rs9377314	0.82[JPT][hapmap]
rs9386291	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9386293	0.88[ASN][1000 genomes]
rs9386294	0.82[JPT][hapmap]
rs9390779	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs9390788	0.82[JPT][hapmap]
rs9399732	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9399733	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs9404143	0.89[ASN][1000 genomes]
rs9404145	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9404148	0.90[CEU][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9404152	0.82[JPT][hapmap]
rs9404153	0.86[JPT][hapmap]
rs9485542	0.86[ASN][1000 genomes]
rs9498691	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498693	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9498694	0.87[ASN][1000 genomes]
rs9498695	0.88[CEU][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs9498696	0.86[ASN][1000 genomes]
rs9498697	0.86[ASN][1000 genomes]
rs9498698	0.82[ASN][1000 genomes]
rs9498701	0.89[CEU][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9498702	0.88[ASN][1000 genomes]
rs9498713	0.91[JPT][hapmap]
rs9498727	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:102217000-102218200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:102217000-102218400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:102217000-102218600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:102217600-102218200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:102217600-102218400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:102217600-102218400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:102217600-102224600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:102217800-102218600	Active TSS	Pancreatic Islets	Pancreatic Islet

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