Variant report

Variant	rs9402237
Chromosome Location	chr6:130847047-130847048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:130838352..130841277-chr6:130845741..130847513,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1815602	0.88[ASN][1000 genomes]
rs1933758	0.86[EUR][1000 genomes]
rs1933772	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1933773	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6903831	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6904870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375723	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375727	0.88[ASN][1000 genomes]
rs9388799	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9402238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs946300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9492633	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130839400-130848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:130840000-130847600	Weak transcription	HMEC	breast
3	chr6:130840000-130847800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:130842200-130847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:130844600-130848400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:130844600-130848600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:130844800-130847400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:130844800-130847800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:130844800-130848000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:130844800-130848000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:130844800-130848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:130845000-130847600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:130845000-130847800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:130845000-130848200	Enhancers	Fetal Thymus	thymus
15	chr6:130845000-130848400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:130845200-130848000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:130845200-130848200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:130845600-130848800	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:130845800-130848600	Enhancers	GM12878-XiMat	blood
20	chr6:130846000-130847200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:130846000-130851000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:130846200-130847200	Enhancers	Brain Anterior Caudate	brain
23	chr6:130846400-130847400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:130846400-130848600	Enhancers	Dnd41	blood
25	chr6:130846600-130847800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:130846600-130848800	Enhancers	Primary T cells from cord blood	blood
27	chr6:130846600-130849000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:130847000-130847400	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:130847000-130847600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links