Variant report

Variant	rs9404089
Chromosome Location	chr6:101608941-101608942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101328129..101329755-chr6:101606100..101609085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260000	Chromatin interaction
ENSG00000112249	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11155850	0.81[AMR][1000 genomes]
rs11155852	0.87[AMR][1000 genomes]
rs11155855	0.87[AMR][1000 genomes]
rs12164026	0.81[AMR][1000 genomes]
rs2797369	0.87[ASN][1000 genomes]
rs3905202	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4133169	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4143742	0.87[AMR][1000 genomes]
rs4291101	0.81[AMR][1000 genomes]
rs4385317	0.81[AMR][1000 genomes]
rs58920424	0.82[AMR][1000 genomes]
rs6906423	0.95[ASN][1000 genomes]
rs6912251	0.87[AMR][1000 genomes]
rs6938926	0.87[AMR][1000 genomes]
rs72610828	0.87[AMR][1000 genomes]
rs72610830	0.87[AMR][1000 genomes]
rs72610833	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72610834	0.93[ASN][1000 genomes]
rs72610835	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72610837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768736	0.87[AMR][1000 genomes]
rs9373603	0.87[AMR][1000 genomes]
rs9377259	0.87[AMR][1000 genomes]
rs9377262	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9386270	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9390721	0.87[AMR][1000 genomes]
rs9390725	0.87[AMR][1000 genomes]
rs9390731	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9390732	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9399704	0.87[AMR][1000 genomes]
rs9399712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9404080	0.87[AMR][1000 genomes]
rs9404083	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9404085	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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