Variant report

Variant	rs9404153
Chromosome Location	chr6:102303369-102303370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10485276	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs11156157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11962789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325060	0.86[JPT][hapmap]
rs1340266	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1361444	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1361445	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1361446	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1408767	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1408768	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1555775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1556993	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs17062480	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1965603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2038842	0.81[ASN][1000 genomes]
rs2039853	0.81[ASN][1000 genomes]
rs2147714	0.81[ASN][1000 genomes]
rs2246394	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2399635	0.81[JPT][hapmap]
rs2399636	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2518191	1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2518193	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2518198	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2518200	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2518201	0.81[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs2518202	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2518203	0.81[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs2518206	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2518266	0.81[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs2518267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2518268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2764218	0.81[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2764220	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2764222	0.81[JPT][hapmap]
rs2764224	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2764225	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2764226	0.81[JPT][hapmap]
rs2764228	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2764229	0.81[ASN][1000 genomes]
rs2764230	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2764231	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2764233	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2764236	0.81[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs2791812	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2791817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2791818	0.81[JPT][hapmap]
rs2791819	0.81[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs2791821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2791823	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2791826	0.90[ASN][1000 genomes]
rs2791827	0.81[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2791832	0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2791834	0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2791837	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2852573	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2852574	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2852576	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap]
rs4501440	1.00[YRI][hapmap]
rs4839802	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4839803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4839804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4840195	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4840196	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4840197	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4840198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4840199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4840200	0.85[MKK][hapmap];1.00[YRI][hapmap]
rs6570996	1.00[YRI][hapmap]
rs6922753	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7749469	0.85[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap]
rs7754022	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9322609	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs9322611	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9322613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9377306	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9377308	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9377314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9377315	1.00[CEU][hapmap];0.91[TSI][hapmap]
rs9377318	1.00[YRI][hapmap]
rs9386291	0.85[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9386294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390784	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390785	0.91[ASN][1000 genomes]
rs9390788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399728	0.86[JPT][hapmap]
rs9399732	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9399733	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9404145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9404148	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9404152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9498691	0.86[JPT][hapmap]
rs9498693	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9498694	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9498695	0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs9498698	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9498701	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9498703	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9498713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9498727	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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