Variant report

Variant	rs9406518
Chromosome Location	chr9:15597849-15597850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10116904	1.00[ASN][1000 genomes]
rs10117524	1.00[ASN][1000 genomes]
rs10118595	1.00[ASN][1000 genomes]
rs10118675	1.00[ASN][1000 genomes]
rs10119257	1.00[ASN][1000 genomes]
rs10119931	1.00[ASN][1000 genomes]
rs10120171	1.00[ASN][1000 genomes]
rs10121012	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10121911	1.00[ASN][1000 genomes]
rs10121971	1.00[ASN][1000 genomes]
rs10123084	1.00[ASN][1000 genomes]
rs10124718	1.00[ASN][1000 genomes]
rs10124746	1.00[ASN][1000 genomes]
rs1041529	1.00[ASN][1000 genomes]
rs10962054	1.00[ASN][1000 genomes]
rs10962061	1.00[ASN][1000 genomes]
rs12336383	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12336445	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12337310	1.00[ASN][1000 genomes]
rs12344963	1.00[ASN][1000 genomes]
rs12348561	1.00[ASN][1000 genomes]
rs12348564	1.00[ASN][1000 genomes]
rs12348780	1.00[ASN][1000 genomes]
rs12350062	1.00[ASN][1000 genomes]
rs12350903	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12352398	1.00[ASN][1000 genomes]
rs12353048	1.00[ASN][1000 genomes]
rs175762	1.00[ASN][1000 genomes]
rs202321	1.00[ASN][1000 genomes]
rs2064030	1.00[ASN][1000 genomes]
rs2202865	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2665515	1.00[ASN][1000 genomes]
rs2737840	1.00[ASN][1000 genomes]
rs276434	1.00[ASN][1000 genomes]
rs276437	1.00[ASN][1000 genomes]
rs276438	1.00[ASN][1000 genomes]
rs276439	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276440	1.00[ASN][1000 genomes]
rs276442	1.00[ASN][1000 genomes]
rs276445	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276446	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276450	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs276451	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2777951	1.00[ASN][1000 genomes]
rs2795125	1.00[ASN][1000 genomes]
rs2795128	1.00[ASN][1000 genomes]
rs2821525	1.00[ASN][1000 genomes]
rs2821529	1.00[ASN][1000 genomes]
rs2821542	1.00[ASN][1000 genomes]
rs2821543	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2821544	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28449490	1.00[ASN][1000 genomes]
rs28497163	1.00[ASN][1000 genomes]
rs28659858	0.91[AMR][1000 genomes]
rs28796681	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28800775	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28805077	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28808908	1.00[ASN][1000 genomes]
rs28844368	1.00[ASN][1000 genomes]
rs28882210	1.00[ASN][1000 genomes]
rs28893033	1.00[ASN][1000 genomes]
rs2891001	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3119700	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3122701	1.00[ASN][1000 genomes]
rs3122705	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3129711	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs365710	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381205	1.00[ASN][1000 genomes]
rs392627	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs398117	1.00[ASN][1000 genomes]
rs398178	1.00[ASN][1000 genomes]
rs399808	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs401393	1.00[ASN][1000 genomes]
rs413356	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs415157	1.00[ASN][1000 genomes]
rs418153	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs424131	1.00[ASN][1000 genomes]
rs592452	1.00[ASN][1000 genomes]
rs7021840	1.00[ASN][1000 genomes]
rs7852936	1.00[ASN][1000 genomes]
rs7860339	1.00[ASN][1000 genomes]
rs796391	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs811282	1.00[ASN][1000 genomes]
rs926154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15587000-15620400	Weak transcription	Pancreas	Pancrea
2	chr9:15588600-15600800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:15588600-15601000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:15589200-15609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:15589400-15610600	Weak transcription	Thymus	Thymus
6	chr9:15592800-15600600	Weak transcription	Fetal Thymus	thymus
7	chr9:15592800-15614000	Weak transcription	Left Ventricle	heart
8	chr9:15593000-15600800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:15595800-15599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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