Variant report

Variant	rs9406693
Chromosome Location	chr9:17755711-17755712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10116499	1.00[EUR][1000 genomes]
rs3808678	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs3824371	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs4461996	1.00[EUR][1000 genomes]
rs4634756	1.00[EUR][1000 genomes]
rs56036751	1.00[EUR][1000 genomes]
rs56224609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56902114	1.00[AMR][1000 genomes]
rs58362676	1.00[EUR][1000 genomes]
rs6475182	1.00[EUR][1000 genomes]
rs727112	1.00[EUR][1000 genomes]
rs73412768	1.00[EUR][1000 genomes]
rs73642207	1.00[EUR][1000 genomes]
rs73642208	1.00[EUR][1000 genomes]
rs7860584	1.00[EUR][1000 genomes]
rs9406694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406695	0.97[AFR][1000 genomes]
rs9406696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406697	0.90[YRI][hapmap];0.91[AFR][1000 genomes]
rs9406728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406735	1.00[EUR][1000 genomes]
rs9407833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9407837	0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs9407838	0.84[YRI][hapmap];0.91[AFR][1000 genomes]
rs9407839	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs9407873	1.00[EUR][1000 genomes]
rs9407884	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17754800-17772600	Weak transcription	Hela-S3	cervix

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