Variant report

Variant	rs9406728
Chromosome Location	chr9:17783011-17783012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs3808668	0.93[YRI][hapmap]
rs3808669	0.92[YRI][hapmap]
rs3808672	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs4461996	1.00[EUR][1000 genomes]
rs4634756	1.00[EUR][1000 genomes]
rs56036751	1.00[EUR][1000 genomes]
rs56224609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58362676	1.00[EUR][1000 genomes]
rs6475182	1.00[EUR][1000 genomes]
rs66488451	0.80[AFR][1000 genomes]
rs727112	1.00[EUR][1000 genomes]
rs73412768	1.00[EUR][1000 genomes]
rs73642207	1.00[EUR][1000 genomes]
rs73642208	1.00[EUR][1000 genomes]
rs7860584	1.00[EUR][1000 genomes]
rs9406693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9406702	0.85[YRI][hapmap]
rs9406703	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs9406706	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs9406707	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs9406708	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs9406709	0.85[YRI][hapmap]
rs9406710	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs9406712	0.89[YRI][hapmap]
rs9406713	0.87[AFR][1000 genomes]
rs9406714	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs9406715	0.87[AFR][1000 genomes]
rs9406716	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs9406717	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs9406718	0.84[AFR][1000 genomes]
rs9406719	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs9406720	0.91[YRI][hapmap]
rs9406723	0.83[YRI][hapmap]
rs9406724	0.92[YRI][hapmap]
rs9406725	0.92[YRI][hapmap]
rs9406726	0.92[YRI][hapmap]
rs9406727	0.93[YRI][hapmap]
rs9406729	0.84[YRI][hapmap]
rs9406735	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9407833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9407849	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs9407850	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs9407851	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs9407852	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs9407853	0.85[AFR][1000 genomes]
rs9407854	0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs9407855	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9407856	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9407857	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9407858	0.83[AFR][1000 genomes]
rs9407859	0.83[AFR][1000 genomes]
rs9407860	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs9407861	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9407862	0.86[YRI][hapmap]
rs9407863	0.93[YRI][hapmap]
rs9407864	0.93[YRI][hapmap]
rs9407865	0.93[YRI][hapmap]
rs9407866	0.92[YRI][hapmap]
rs9407867	0.92[YRI][hapmap]
rs9407869	0.93[YRI][hapmap]
rs9407870	0.93[YRI][hapmap]
rs9407872	0.84[YRI][hapmap]
rs9407873	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9407876	0.84[YRI][hapmap]
rs9407884	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3450929	chr9:17782742-17783097	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17776800-17786200	Weak transcription	Fetal Brain Male	brain
2	chr9:17778800-17784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:17780200-17787200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:17782800-17783400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:17783000-17783600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr9:17783000-17784000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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