Variant report
Variant | rs9407661 |
---|---|
Chromosome Location | chr9:15839862-15839863 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1009468 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs10738415 | 0.85[ASN][1000 genomes] |
rs10756687 | 0.84[CHB][hapmap] |
rs10756688 | 0.89[CHB][hapmap] |
rs10756689 | 0.89[CHB][hapmap] |
rs10756690 | 0.84[CHB][hapmap] |
rs10756704 | 0.81[JPT][hapmap] |
rs10756710 | 0.80[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes] |
rs10756711 | 0.80[CEU][hapmap];0.82[JPT][hapmap] |
rs10810427 | 0.84[CHB][hapmap] |
rs10810428 | 0.84[CHB][hapmap] |
rs10810429 | 0.83[CHB][hapmap] |
rs10810438 | 0.94[CHB][hapmap] |
rs10810440 | 0.88[CHB][hapmap] |
rs10810442 | 1.00[CHB][hapmap] |
rs1081245 | 0.87[ASN][1000 genomes] |
rs10962126 | 0.88[CHB][hapmap] |
rs10962142 | 0.81[JPT][hapmap] |
rs10962147 | 1.00[CHB][hapmap] |
rs10962149 | 1.00[CHB][hapmap] |
rs10962152 | 1.00[CHB][hapmap] |
rs10962153 | 1.00[CHB][hapmap] |
rs10962170 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap] |
rs10962171 | 0.85[AFR][1000 genomes] |
rs1169478 | 0.84[CHB][hapmap] |
rs1169479 | 0.94[CHB][hapmap] |
rs1169480 | 0.89[CHB][hapmap] |
rs12340969 | 0.83[CHB][hapmap] |
rs12341679 | 0.88[CHB][hapmap] |
rs12377371 | 0.89[CHB][hapmap] |
rs12377532 | 0.85[ASN][1000 genomes] |
rs1328288 | 1.00[CHB][hapmap] |
rs13296360 | 0.96[YRI][hapmap];0.83[AFR][1000 genomes] |
rs1341734 | 1.00[CHB][hapmap] |
rs1341737 | 0.81[JPT][hapmap];0.86[YRI][hapmap] |
rs1341738 | 0.81[YRI][hapmap] |
rs1355171 | 0.84[CHB][hapmap] |
rs1355173 | 1.00[CHB][hapmap] |
rs1359953 | 0.89[CHB][hapmap] |
rs1396706 | 0.88[CHB][hapmap] |
rs1539171 | 1.00[CHB][hapmap] |
rs1539172 | 0.81[JPT][hapmap] |
rs1572978 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs1578557 | 0.80[AFR][1000 genomes] |
rs1578558 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
rs1592099 | 0.81[JPT][hapmap] |
rs1891212 | 0.84[CHB][hapmap] |
rs1984246 | 0.89[CHB][hapmap] |
rs2066292 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
rs2096121 | 1.00[CHB][hapmap] |
rs2105320 | 0.87[YRI][hapmap] |
rs2149231 | 0.89[CHB][hapmap] |
rs2153725 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs2153726 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes] |
rs2153727 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2175082 | 0.83[CHB][hapmap] |
rs2185665 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs2382553 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2794634 | 1.00[CHB][hapmap] |
rs2794636 | 1.00[CHB][hapmap] |
rs2891007 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2987069 | 0.89[CHB][hapmap] |
rs2987070 | 1.00[CHB][hapmap] |
rs2987071 | 1.00[CHB][hapmap] |
rs2987072 | 1.00[CHB][hapmap] |
rs3008686 | 1.00[CHB][hapmap] |
rs4146291 | 0.81[JPT][hapmap] |
rs4146293 | 0.81[YRI][hapmap] |
rs4740624 | 0.81[JPT][hapmap] |
rs4741528 | 0.89[CHB][hapmap] |
rs4741534 | 0.82[CHB][hapmap] |
rs4741545 | 0.81[JPT][hapmap] |
rs4741546 | 0.85[CEU][hapmap];0.86[JPT][hapmap] |
rs56401042 | 0.81[AFR][1000 genomes] |
rs6474944 | 0.82[CHB][hapmap] |
rs6474945 | 0.83[CHB][hapmap] |
rs6474954 | 0.82[CHB][hapmap] |
rs6474966 | 0.94[CHB][hapmap] |
rs6474967 | 0.81[JPT][hapmap] |
rs7019205 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7019851 | 1.00[CHB][hapmap] |
rs7023275 | 0.84[CHB][hapmap] |
rs7024440 | 0.88[ASN][1000 genomes] |
rs7025669 | 0.89[CHB][hapmap] |
rs7027202 | 0.89[CHB][hapmap] |
rs7032457 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7032634 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes] |
rs7034484 | 0.87[CHB][hapmap] |
rs7034781 | 0.94[CHB][hapmap] |
rs7036674 | 0.87[CHB][hapmap] |
rs7045018 | 1.00[CHB][hapmap] |
rs7047045 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes] |
rs7467156 | 0.88[CHB][hapmap] |
rs7467207 | 0.83[CHB][hapmap] |
rs7470881 | 0.85[AFR][1000 genomes] |
rs770191 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs770194 | 0.86[YRI][hapmap] |
rs770211 | 1.00[CHB][hapmap] |
rs770213 | 1.00[CHB][hapmap] |
rs770215 | 0.89[CHB][hapmap] |
rs7852250 | 0.87[YRI][hapmap] |
rs7853744 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7857126 | 0.88[ASN][1000 genomes] |
rs7857495 | 0.85[AFR][1000 genomes] |
rs7857601 | 0.84[AFR][1000 genomes] |
rs7860869 | 0.88[CHB][hapmap] |
rs7866641 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes] |
rs7869624 | 1.00[CHB][hapmap] |
rs7871232 | 0.86[AFR][1000 genomes] |
rs7872912 | 1.00[CHB][hapmap] |
rs9298738 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs9298739 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9298740 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9298741 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9406537 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes] |
rs9406539 | 0.88[ASN][1000 genomes] |
rs9406540 | 0.88[ASN][1000 genomes] |
rs9406541 | 0.88[ASN][1000 genomes] |
rs9406542 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9406545 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9407648 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes] |
rs9407649 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes] |
rs9407650 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[ASN][1000 genomes] |
rs9407651 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9407652 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[ASN][1000 genomes] |
rs9407653 | 0.88[ASN][1000 genomes] |
rs9407654 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9407655 | 0.88[ASN][1000 genomes] |
rs9407656 | 0.92[ASN][1000 genomes] |
rs9407657 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9407658 | 0.92[ASN][1000 genomes] |
rs9407660 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9407662 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs9407669 | 0.87[ASN][1000 genomes] |
rs955369 | 0.81[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892625 | chr9:15326251-16064850 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv892627 | chr9:15397969-15909450 | Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
3 | nsv892632 | chr9:15590116-15869845 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv892633 | chr9:15604746-15889411 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv892635 | chr9:15731775-15876507 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv528964 | chr9:15760822-15875162 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv892636 | chr9:15794858-15876507 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv613666 | chr9:15823667-15875162 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv613667 | chr9:15823667-15876507 | Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:15830200-15857200 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr9:15835000-15846600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr9:15835200-15843400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |