Variant report

Variant	rs9410574
Chromosome Location	chr9:70971267-70971268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr9:70971067-70971583	GM12878	blood:	n/a	n/a
2	IRF4	chr9:70971078-70971389	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:70971205-70971560	GM12878	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353608.1-2	chr9:70970081-70972081	NONHSAT131739

Variant related genes	Relation type
PGM5	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs196724	1.00[AMR][1000 genomes]
rs2492263	1.00[AMR][1000 genomes]
rs263787	1.00[AMR][1000 genomes]
rs263788	1.00[AMR][1000 genomes]
rs263790	1.00[AMR][1000 genomes]
rs263791	1.00[AMR][1000 genomes]
rs263792	1.00[AMR][1000 genomes]
rs263800	1.00[AMR][1000 genomes]
rs265098	1.00[AMR][1000 genomes]
rs374472	1.00[AMR][1000 genomes]
rs402654	1.00[AMR][1000 genomes]
rs409014	1.00[AMR][1000 genomes]
rs432347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs454791	1.00[AMR][1000 genomes]
rs583999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs694864	1.00[AMR][1000 genomes]
rs7870358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9410869	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70969200-70971400	Weak transcription	NHLF	lung
2	chr9:70970800-70972200	Active TSS	Aorta	Aorta
3	chr9:70970800-70973800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:70970800-70974000	Active TSS	Rectal Smooth Muscle	rectum
5	chr9:70970800-70974600	Active TSS	Stomach Smooth Muscle	stomach
6	chr9:70970800-70975000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr9:70971000-70971400	Active TSS	Fetal Muscle Trunk	muscle
8	chr9:70971000-70972200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:70971000-70972400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:70971000-70972400	Active TSS	NHDF-Ad	bronchial
11	chr9:70971000-70972800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:70971000-70972800	Active TSS	Colon Smooth Muscle	Colon
13	chr9:70971000-70973000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:70971000-70973000	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr9:70971000-70973200	Active TSS	Fetal Lung	lung
16	chr9:70971000-70973200	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr9:70971000-70973400	Active TSS	HSMMtube	muscle
18	chr9:70971000-70973800	Active TSS	Fetal Kidney	kidney
19	chr9:70971000-70974200	Active TSS	Right Atrium	heart
20	chr9:70971200-70971400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:70971200-70971400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr9:70971200-70971600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
23	chr9:70971200-70972200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:70971200-70972200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:70971200-70972400	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
26	chr9:70971200-70972600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
27	chr9:70971200-70972800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
28	chr9:70971200-70973000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:70971200-70973000	Active TSS	Adipose Nuclei	Adipose
30	chr9:70971200-70973200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:70971200-70973400	Active TSS	Left Ventricle	heart
32	chr9:70971200-70974200	Active TSS	Fetal Stomach	stomach

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