Variant report

Variant	rs9414805
Chromosome Location	chr10:52835959-52835960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10740111	0.81[EUR][1000 genomes]
rs10740130	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10761810	0.91[EUR][1000 genomes]
rs10761811	0.90[EUR][1000 genomes]
rs10822178	0.81[JPT][hapmap]
rs10822189	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10822194	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10822197	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822198	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10822210	0.81[EUR][1000 genomes]
rs10822211	0.81[EUR][1000 genomes]
rs10822230	0.92[EUR][1000 genomes]
rs10995473	0.83[EUR][1000 genomes]
rs10995617	0.94[EUR][1000 genomes]
rs10995620	0.81[EUR][1000 genomes]
rs10995651	0.80[EUR][1000 genomes]
rs10995673	0.92[EUR][1000 genomes]
rs10995681	0.92[EUR][1000 genomes]
rs12218335	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12220644	0.80[EUR][1000 genomes]
rs12221226	0.81[EUR][1000 genomes]
rs16913900	0.95[EUR][1000 genomes]
rs2339675	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2660202	0.84[AMR][1000 genomes]
rs2666543	0.87[AMR][1000 genomes]
rs2879544	0.94[EUR][1000 genomes]
rs7074892	0.81[EUR][1000 genomes]
rs7084128	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7084767	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7097311	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7912628	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9299457	0.81[EUR][1000 genomes]
rs9414806	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9414807	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414808	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9414809	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9414810	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9415709	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9415710	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9415711	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52832800-52837400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr10:52832800-52840000	Active TSS	Aorta	Aorta
3	chr10:52833000-52836200	Active TSS	Psoas Muscle	Psoas
4	chr10:52833000-52836400	Active TSS	Right Ventricle	heart
5	chr10:52833000-52837000	Active TSS	Right Atrium	heart
6	chr10:52833000-52837600	Active TSS	Colon Smooth Muscle	Colon
7	chr10:52833200-52836000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr10:52833200-52836400	Active TSS	Ovary	ovary
9	chr10:52833200-52836600	Active TSS	Rectal Smooth Muscle	rectum
10	chr10:52833200-52837600	Active TSS	NHLF	lung
11	chr10:52833400-52836600	Active TSS	Brain Anterior Caudate	brain
12	chr10:52833600-52836400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr10:52833600-52836400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
14	chr10:52833600-52836600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
15	chr10:52833600-52837200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr10:52833800-52836000	Active TSS	Brain Angular Gyrus	brain
17	chr10:52833800-52836400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:52833800-52837600	Active TSS	Stomach Smooth Muscle	stomach
19	chr10:52834400-52836200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr10:52834600-52836200	Active TSS	Fetal Brain Female	brain
21	chr10:52834800-52836200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr10:52834800-52836600	Active TSS	Fetal Muscle Trunk	muscle
23	chr10:52834800-52837000	Active TSS	Fetal Stomach	stomach
24	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:52835000-52836000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
26	chr10:52835000-52836000	Active TSS	Brain Germinal Matrix	brain
27	chr10:52835200-52836000	Enhancers	Fetal Lung	lung
28	chr10:52835200-52836200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr10:52835200-52836200	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr10:52835200-52837000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr10:52835200-52837600	Active TSS	Fetal Muscle Leg	muscle
32	chr10:52835400-52836400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:52835400-52836400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:52835400-52836400	Flanking Active TSS	NHDF-Ad	bronchial
35	chr10:52835400-52837600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:52835600-52836000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr10:52835600-52836200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:52835600-52836400	Active TSS	Brain Hippocampus Middle	brain
39	chr10:52835600-52836600	Active TSS	H1 Cell Line	embryonic stem cell
40	chr10:52835600-52836600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:52835600-52837200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:52835600-52838000	Weak transcription	Left Ventricle	heart
43	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:52835800-52836000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:52835800-52836000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
46	chr10:52835800-52836000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr10:52835800-52836000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:52835800-52836200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
49	chr10:52835800-52836200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
50	chr10:52835800-52836200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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