Variant report

Variant	rs9414806
Chromosome Location	chr10:52836156-52836157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52832484..52833988-chr10:52835992..52837513,2	K562	blood:

Variant related genes	Relation type
ENSG00000185532	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508935	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10740111	0.86[EUR][1000 genomes]
rs10740130	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761738	0.93[EUR][1000 genomes]
rs10761807	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761831	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822188	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822189	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10822194	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822197	0.81[EUR][1000 genomes]
rs10822198	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822210	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822211	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822229	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995458	0.93[EUR][1000 genomes]
rs10995473	0.88[EUR][1000 genomes]
rs10995526	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10995620	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995655	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995788	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10995790	0.82[ASN][1000 genomes]
rs12218335	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220644	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12221226	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12415785	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913257	0.93[EUR][1000 genomes]
rs16913956	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983222	0.90[EUR][1000 genomes]
rs2339675	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660202	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2666543	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3964605	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4622210	0.85[EUR][1000 genomes]
rs4935220	0.81[AFR][1000 genomes]
rs55767509	0.93[EUR][1000 genomes]
rs7074892	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084128	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097311	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912628	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299457	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414805	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9414807	0.83[EUR][1000 genomes]
rs9414808	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414809	0.80[EUR][1000 genomes]
rs9414810	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415709	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415710	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415711	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633564	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52832800-52837400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr10:52832800-52840000	Active TSS	Aorta	Aorta
3	chr10:52833000-52836200	Active TSS	Psoas Muscle	Psoas
4	chr10:52833000-52836400	Active TSS	Right Ventricle	heart
5	chr10:52833000-52837000	Active TSS	Right Atrium	heart
6	chr10:52833000-52837600	Active TSS	Colon Smooth Muscle	Colon
7	chr10:52833200-52836400	Active TSS	Ovary	ovary
8	chr10:52833200-52836600	Active TSS	Rectal Smooth Muscle	rectum
9	chr10:52833200-52837600	Active TSS	NHLF	lung
10	chr10:52833400-52836600	Active TSS	Brain Anterior Caudate	brain
11	chr10:52833600-52836400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr10:52833600-52836400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
13	chr10:52833600-52836600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
14	chr10:52833600-52837200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr10:52833800-52836400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:52833800-52837600	Active TSS	Stomach Smooth Muscle	stomach
17	chr10:52834400-52836200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
18	chr10:52834600-52836200	Active TSS	Fetal Brain Female	brain
19	chr10:52834800-52836200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
20	chr10:52834800-52836600	Active TSS	Fetal Muscle Trunk	muscle
21	chr10:52834800-52837000	Active TSS	Fetal Stomach	stomach
22	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:52835200-52836200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr10:52835200-52836200	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr10:52835200-52837000	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr10:52835200-52837600	Active TSS	Fetal Muscle Leg	muscle
27	chr10:52835400-52836400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:52835400-52836400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:52835400-52836400	Flanking Active TSS	NHDF-Ad	bronchial
30	chr10:52835400-52837600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:52835600-52836200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:52835600-52836400	Active TSS	Brain Hippocampus Middle	brain
33	chr10:52835600-52836600	Active TSS	H1 Cell Line	embryonic stem cell
34	chr10:52835600-52836600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:52835600-52837200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:52835600-52838000	Weak transcription	Left Ventricle	heart
37	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:52835800-52836200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
39	chr10:52835800-52836200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
40	chr10:52835800-52836200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:52835800-52836200	Flanking Active TSS	Fetal Kidney	kidney
42	chr10:52835800-52836200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr10:52835800-52836400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
44	chr10:52835800-52837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:52835800-52839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:52835800-52839400	Weak transcription	Fetal Brain Male	brain
47	chr10:52836000-52836200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
48	chr10:52836000-52836200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
49	chr10:52836000-52836200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
50	chr10:52836000-52836200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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