Variant report

Variant	rs9415710
Chromosome Location	chr10:52838819-52838820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10508935	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10740111	0.84[EUR][1000 genomes]
rs10740130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761738	0.91[EUR][1000 genomes]
rs10761807	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761831	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822188	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822189	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10822194	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822197	0.83[EUR][1000 genomes]
rs10822198	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822210	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822211	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822229	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995458	0.91[EUR][1000 genomes]
rs10995473	0.86[EUR][1000 genomes]
rs10995526	0.91[EUR][1000 genomes]
rs10995617	0.81[EUR][1000 genomes]
rs10995620	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995651	1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995655	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995788	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10995790	0.82[ASN][1000 genomes]
rs12218335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220644	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12221226	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12415785	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767015	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913257	0.91[EUR][1000 genomes]
rs16913900	0.82[EUR][1000 genomes]
rs16913956	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983222	0.88[EUR][1000 genomes]
rs2339675	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660202	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2666543	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2879544	0.81[EUR][1000 genomes]
rs3964605	0.91[EUR][1000 genomes]
rs4622210	0.84[EUR][1000 genomes]
rs4935220	0.86[AFR][1000 genomes]
rs55767509	0.91[EUR][1000 genomes]
rs7074892	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097311	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912628	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299457	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414805	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9414806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414807	0.81[EUR][1000 genomes]
rs9414808	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414809	0.82[EUR][1000 genomes]
rs9414810	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633564	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52832800-52840000	Active TSS	Aorta	Aorta
2	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:52835800-52839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:52835800-52839400	Weak transcription	Fetal Brain Male	brain
6	chr10:52836000-52839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:52836000-52840000	Weak transcription	Fetal Lung	lung
8	chr10:52836200-52839200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:52836200-52840000	Weak transcription	Fetal Brain Female	brain
10	chr10:52836200-52841200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:52836200-52842800	Weak transcription	Psoas Muscle	Psoas
12	chr10:52836400-52840000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
14	chr10:52836600-52841000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:52837000-52839000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:52837000-52839200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:52837000-52839400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:52837000-52839400	Weak transcription	Right Atrium	heart
19	chr10:52837000-52840000	Weak transcription	Fetal Stomach	stomach
20	chr10:52837200-52839000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:52837200-52839400	Weak transcription	Fetal Kidney	kidney
22	chr10:52837200-52843000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:52837600-52839000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:52837600-52839000	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:52837600-52839000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:52837600-52839200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:52837600-52840000	Weak transcription	NHLF	lung
29	chr10:52837600-52840200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:52837600-52842800	Weak transcription	NHDF-Ad	bronchial
31	chr10:52838000-52839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:52838200-52842800	Weak transcription	Left Ventricle	heart
33	chr10:52838800-52839000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr10:52838800-52839000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:52838800-52839400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:52838800-52840600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:52838800-52840600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:52838800-52840600	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:52838800-52841200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:52838800-52841600	Enhancers	H1 Cell Line	embryonic stem cell
41	chr10:52838800-52841600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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