Variant report

Variant	rs9415721
Chromosome Location	chr10:52877133-52877134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10822178	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10822190	0.96[EUR][1000 genomes]
rs12355844	0.88[EUR][1000 genomes]
rs2339628	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2339673	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2339678	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2879523	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2879547	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4603249	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4935010	0.83[EUR][1000 genomes]
rs4935011	0.96[EUR][1000 genomes]
rs4935216	0.80[EUR][1000 genomes]
rs4935221	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4935228	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904024	0.83[EUR][1000 genomes]
rs9414823	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9415718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9415730	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:52871800-52877200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:52875600-52877200	Enhancers	NHDF-Ad	bronchial
6	chr10:52875600-52877400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:52876000-52877200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:52876000-52877400	Enhancers	Psoas Muscle	Psoas
9	chr10:52876000-52879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:52876200-52878600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:52876400-52878000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:52876600-52877200	Weak transcription	Right Atrium	heart
13	chr10:52876600-52877600	Enhancers	Aorta	Aorta
14	chr10:52876600-52879400	Enhancers	NHLF	lung
15	chr10:52876800-52877600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:52876800-52877600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:52876800-52877800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:52876800-52878000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:52876800-52878000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:52876800-52900400	Weak transcription	Left Ventricle	heart
21	chr10:52877000-52877200	Active TSS	Fetal Lung	lung
22	chr10:52877000-52877400	Enhancers	Right Ventricle	heart
23	chr10:52877000-52877400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:52877000-52877400	Enhancers	HSMM	muscle
25	chr10:52877000-52877400	Enhancers	NHEK	skin
26	chr10:52877000-52878200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links