Variant report

Variant	rs9415743
Chromosome Location	chr10:52919109-52919110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10490977	1.00[ASN][1000 genomes]
rs10996353	1.00[ASN][1000 genomes]
rs12257648	1.00[ASN][1000 genomes]
rs16914938	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915151	1.00[EUR][1000 genomes]
rs16915184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915908	1.00[ASN][1000 genomes]
rs1904673	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1904674	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41403246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408019	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59014714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59140787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59250902	0.94[AFR][1000 genomes]
rs59374151	1.00[ASN][1000 genomes]
rs59686966	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60965856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100315	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338462	1.00[ASN][1000 genomes]
rs74131784	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131787	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131789	0.95[EUR][1000 genomes]
rs74131799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131800	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133524	1.00[EUR][1000 genomes]
rs74133525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133535	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299471	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414836	0.94[AFR][1000 genomes]
rs9414837	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414843	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414845	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414846	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414847	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414850	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414851	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414852	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414853	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414855	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414856	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414857	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414858	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414859	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414860	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414861	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414863	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414864	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414865	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415735	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415749	0.94[AFR][1000 genomes]
rs9415751	0.94[AFR][1000 genomes]
rs9415758	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415759	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415760	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415761	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415764	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415765	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415766	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415768	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415769	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415771	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415772	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415773	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415774	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415775	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415776	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52898000-52919600	Weak transcription	NHLF	lung
3	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
6	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
7	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:52913000-52922000	Weak transcription	Right Ventricle	heart
9	chr10:52913200-52921800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:52917000-52921400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:52917200-52921600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:52917200-52921600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:52917200-52921600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:52917200-52921600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:52917200-52921800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:52917400-52929000	Weak transcription	NHDF-Ad	bronchial
17	chr10:52918600-52919200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:52918800-52919400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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