Variant report

Variant	rs9415777
Chromosome Location	chr10:52960920-52960921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10740166	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10996069	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1871631	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1904700	0.83[JPT][hapmap]
rs7897633	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7905063	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906944	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9414844	0.82[AFR][1000 genomes]
rs9415788	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9415777	PRKG1	cis	parietal	SCAN
rs9415777	PRKG1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52936800-52964400	Weak transcription	NHLF	lung
2	chr10:52946400-52964400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52949200-52966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:52950400-52961400	Weak transcription	Aorta	Aorta
5	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:52954800-52964200	Weak transcription	Psoas Muscle	Psoas
7	chr10:52956800-52964200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:52957400-52965000	Weak transcription	Pancreas	Pancrea
9	chr10:52958800-52975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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