Variant report

Variant	rs9425625
Chromosome Location	chr1:172448594-172448595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172442117..172444152-chr1:172447245..172449151,2	MCF-7	breast:
2	chr1:172448573..172451341-chr1:172458163..172460914,3	K562	blood:
3	chr1:172448523..172450358-chr1:172453507..172455135,2	K562	blood:
4	chr1:172448419..172451395-chr1:172454966..172457854,2	MCF-7	breast:
5	chr1:172446186..172449465-chr1:172453290..172456468,4	MCF-7	breast:
6	chr1:172444366..172446246-chr1:172448282..172450692,2	K562	blood:
7	chr1:172446479..172448732-chr1:172458386..172460620,2	MCF-7	breast:
8	chr1:172446019..172448737-chr1:172490304..172491873,2	MCF-7	breast:
9	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
10	chr1:172448573..172451341-chr1:172458163..172460914,2	K562	blood:
11	chr1:172418092..172419733-chr1:172445872..172448682,2	MCF-7	breast:
12	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1009802	1.00[CEU][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1041911	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10911629	1.00[CHB][hapmap]
rs10911792	0.91[CEU][hapmap]
rs11802410	1.00[CHB][hapmap]
rs12069167	1.00[CHB][hapmap]
rs12134818	1.00[CHB][hapmap]
rs12138803	1.00[CHB][hapmap]
rs2001130	0.81[AFR][1000 genomes]
rs2032528	0.86[CEU][hapmap];0.87[TSI][hapmap]
rs2213738	0.87[ASW][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs4916263	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs4916264	0.91[CEU][hapmap];0.85[TSI][hapmap]
rs4916265	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs6656400	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6659116	0.83[AFR][1000 genomes]
rs71485882	0.90[EUR][1000 genomes]
rs7551242	0.87[ASW][hapmap];0.91[CEU][hapmap];0.90[GIH][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9425330	0.87[ASW][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs9425332	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9425333	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9425623	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9425628	0.91[CEU][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172438200-172449200	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:172445000-172449400	Weak transcription	Primary T cells from cord blood	blood
4	chr1:172445000-172452400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:172445600-172448600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:172445600-172449800	Weak transcription	HepG2	liver
7	chr1:172445800-172448600	Enhancers	NHEK	skin
8	chr1:172445800-172449200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:172445800-172450800	Weak transcription	Fetal Intestine Large	intestine
10	chr1:172445800-172451000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:172445800-172451600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:172446800-172449200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:172446800-172449200	Weak transcription	Pancreas	Pancrea
14	chr1:172446800-172451000	Weak transcription	A549	lung
15	chr1:172447600-172452800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:172447800-172449800	Enhancers	Placenta	Placenta
17	chr1:172447800-172449800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:172448000-172448600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:172448000-172449200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:172448200-172452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:172448200-172452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:172448400-172449400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:172448400-172449600	Enhancers	K562	blood
24	chr1:172448400-172452800	Weak transcription	HMEC	breast

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