Variant report

Variant	rs9426165
Chromosome Location	chr1:225178787-225178788
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10495228	0.82[ASN][1000 genomes]
rs10495229	0.86[ASN][1000 genomes]
rs10495230	0.83[ASN][1000 genomes]
rs12561993	0.85[ASN][1000 genomes]
rs12562917	0.88[ASN][1000 genomes]
rs12563033	0.85[ASN][1000 genomes]
rs12563857	0.85[ASN][1000 genomes]
rs12563866	0.88[ASN][1000 genomes]
rs12564683	0.81[ASN][1000 genomes]
rs12564768	0.88[ASN][1000 genomes]
rs12564776	0.88[ASN][1000 genomes]
rs12565019	0.82[ASN][1000 genomes]
rs12565073	0.88[ASN][1000 genomes]
rs12565439	0.86[ASN][1000 genomes]
rs12565833	0.88[ASN][1000 genomes]
rs12566396	0.86[ASN][1000 genomes]
rs12566857	0.86[ASN][1000 genomes]
rs12566886	0.86[ASN][1000 genomes]
rs12567069	0.88[ASN][1000 genomes]
rs12567461	0.82[ASN][1000 genomes]
rs12567470	0.82[ASN][1000 genomes]
rs12567499	0.86[ASN][1000 genomes]
rs12567812	0.88[ASN][1000 genomes]
rs12568142	0.85[ASN][1000 genomes]
rs1482279	0.86[ASN][1000 genomes]
rs1482280	0.83[ASN][1000 genomes]
rs1506070	0.85[ASN][1000 genomes]
rs1587980	0.85[ASN][1000 genomes]
rs1600865	0.81[ASN][1000 genomes]
rs16857787	0.82[ASN][1000 genomes]
rs16858145	0.82[ASN][1000 genomes]
rs16858216	0.82[ASN][1000 genomes]
rs16858299	0.81[ASN][1000 genomes]
rs16858661	0.86[ASN][1000 genomes]
rs16858758	0.86[ASN][1000 genomes]
rs16858766	0.86[ASN][1000 genomes]
rs16858829	0.86[ASN][1000 genomes]
rs16858831	0.86[ASN][1000 genomes]
rs16858932	0.86[ASN][1000 genomes]
rs16858962	0.86[ASN][1000 genomes]
rs1905113	0.85[ASN][1000 genomes]
rs1905114	0.86[ASN][1000 genomes]
rs1905115	0.86[ASN][1000 genomes]
rs1905117	0.86[ASN][1000 genomes]
rs1936629	0.81[ASN][1000 genomes]
rs1982707	0.86[ASN][1000 genomes]
rs2101143	0.82[ASN][1000 genomes]
rs2291227	0.86[ASN][1000 genomes]
rs2406098	0.82[ASN][1000 genomes]
rs2449257	0.88[ASN][1000 genomes]
rs2449259	0.88[ASN][1000 genomes]
rs2449260	0.88[ASN][1000 genomes]
rs2449273	0.85[ASN][1000 genomes]
rs2449274	0.85[ASN][1000 genomes]
rs2449276	0.85[ASN][1000 genomes]
rs2449280	0.85[ASN][1000 genomes]
rs2449292	0.88[ASN][1000 genomes]
rs2449311	0.85[ASN][1000 genomes]
rs2449313	0.85[ASN][1000 genomes]
rs2449316	0.82[ASN][1000 genomes]
rs2456335	0.83[ASN][1000 genomes]
rs2456339	0.85[ASN][1000 genomes]
rs2456340	0.85[ASN][1000 genomes]
rs2489300	0.86[ASN][1000 genomes]
rs2489302	0.81[ASN][1000 genomes]
rs2489310	0.81[ASN][1000 genomes]
rs2489322	0.88[ASN][1000 genomes]
rs2489328	0.88[ASN][1000 genomes]
rs2489330	0.88[ASN][1000 genomes]
rs2489332	0.83[ASN][1000 genomes]
rs2489341	0.88[ASN][1000 genomes]
rs2489344	0.88[ASN][1000 genomes]
rs2501061	0.86[ASN][1000 genomes]
rs2501064	0.86[ASN][1000 genomes]
rs2501066	0.86[ASN][1000 genomes]
rs2501081	0.82[ASN][1000 genomes]
rs2501125	0.86[ASN][1000 genomes]
rs2501127	0.83[ASN][1000 genomes]
rs2501129	0.86[ASN][1000 genomes]
rs2501130	0.88[ASN][1000 genomes]
rs2501134	0.88[ASN][1000 genomes]
rs2501135	0.84[ASN][1000 genomes]
rs2501140	0.86[ASN][1000 genomes]
rs2501141	0.86[ASN][1000 genomes]
rs2501143	0.84[ASN][1000 genomes]
rs2501153	0.86[ASN][1000 genomes]
rs2501156	0.86[ASN][1000 genomes]
rs4379650	0.82[ASN][1000 genomes]
rs55668169	0.86[ASN][1000 genomes]
rs55754430	0.82[ASN][1000 genomes]
rs55761817	0.84[ASN][1000 genomes]
rs55785201	0.83[ASN][1000 genomes]
rs55786647	0.86[ASN][1000 genomes]
rs55876129	0.85[ASN][1000 genomes]
rs55962425	0.85[ASN][1000 genomes]
rs56088704	0.86[ASN][1000 genomes]
rs56152573	0.86[ASN][1000 genomes]
rs56251723	0.83[ASN][1000 genomes]
rs56337810	0.83[ASN][1000 genomes]
rs57889280	0.83[ASN][1000 genomes]
rs61466304	0.82[ASN][1000 genomes]
rs6677680	0.82[ASN][1000 genomes]
rs6697156	0.85[ASN][1000 genomes]
rs729398	0.82[ASN][1000 genomes]
rs7523949	0.86[ASN][1000 genomes]
rs7531542	0.85[ASN][1000 genomes]
rs981068	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1804634	chr1:225137134-225206826	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225157600-225201400	Weak transcription	Pancreas	Pancrea

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