Variant report

Variant	rs9427620
Chromosome Location	chr1:195868668-195868669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:195868249..195869806-chr1:196117660..196119687,2	K562	blood:
2	chr1:195836992..195839913-chr1:195867616..195871581,4	K562	blood:
3	chr1:195831209..195836948-chr1:195865315..195869441,6	K562	blood:
4	chr1:195832078..195834352-chr1:195866206..195869346,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1376806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1376807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1376809	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1562945	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1562946	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1562947	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17633002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1975680	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2167515	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2167516	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2334796	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2334902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2923872	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3008555	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3008556	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3008557	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3008558	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3008562	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3008574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010153	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3010154	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34940267	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs983647	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs983648	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470768	chr1:195804144-195872295	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2756364	chr1:195818443-196020535	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2755652	chr1:195819871-195885825	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2755902	chr1:195819871-196028887	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1005644	chr1:195820337-195874907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999005	chr1:195825370-195874907	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv872945	chr1:195826738-195881459	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1004411	chr1:195828499-195874907	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1010327	chr1:195828499-195876292	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2760075	chr1:195828511-195874907	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1006423	chr1:195830320-195874907	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1004106	chr1:195830320-195876060	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1009478	chr1:195830320-195876979	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1007929	chr1:195830760-195874907	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv548718	chr1:195831030-195869123	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv520252	chr1:195831030-195872295	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv548719	chr1:195831030-195872295	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv548720	chr1:195831030-195874388	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv548721	chr1:195831030-195881459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv548722	chr1:195831358-195872295	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv467284	chr1:195832253-195869123	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv548723	chr1:195832253-195869123	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv872947	chr1:195832253-195881459	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv467295	chr1:195834735-195872295	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv467306	chr1:195834735-195872295	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv548724	chr1:195834735-195872295	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv548725	chr1:195836924-195872295	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv999296	chr1:195837330-195874907	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv548726	chr1:195838901-195872295	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv548727	chr1:195838901-195873063	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv548728	chr1:195838901-195874388	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv548730	chr1:195852964-195871839	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv548731	chr1:195852964-195874388	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv548732	chr1:195853219-195871839	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv467317	chr1:195853219-195872295	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv467328	chr1:195853219-195872295	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv548733	chr1:195853219-195872295	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv548734	chr1:195859022-195874856	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv525153	chr1:195866450-195930996	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195864200-195868800	Weak transcription	HMEC	breast
2	chr1:195864400-195868800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:195864400-195869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:195866800-195869400	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:195867000-195871000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:195867800-195868800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:195867800-195868800	Active TSS	K562	blood
8	chr1:195868200-195870200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:195868600-195869800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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