Variant report

Variant	rs9431262
Chromosome Location	chr1:220746822-220746823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:220746643-220746826	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220741257..220743990-chr1:220745634..220747216,2	K562	blood:

Variant related genes	Relation type
RN7SL464P	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1073460	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10779408	0.88[EUR][1000 genomes]
rs10779409	0.90[EUR][1000 genomes]
rs12048541	0.90[EUR][1000 genomes]
rs12753927	0.86[EUR][1000 genomes]
rs12758833	0.90[EUR][1000 genomes]
rs17007855	0.86[EUR][1000 genomes]
rs17007885	0.89[EUR][1000 genomes]
rs1933002	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1933008	0.85[ASN][1000 genomes]
rs2253641	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378401	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2589578	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2589588	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786601	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786604	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786607	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2786609	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786613	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2786619	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2889928	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2993209	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2994527	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35327085	0.86[EUR][1000 genomes]
rs35553664	0.90[EUR][1000 genomes]
rs3737296	0.82[AFR][1000 genomes]
rs4011894	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6541155	0.82[AFR][1000 genomes]
rs6677302	0.81[EUR][1000 genomes]
rs6699189	0.82[AFR][1000 genomes]
rs6699196	0.82[AFR][1000 genomes]
rs7514431	0.82[AFR][1000 genomes]
rs7532064	0.85[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:220739200-220747200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:220739200-220748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:220742200-220749600	Weak transcription	Aorta	Aorta
5	chr1:220745200-220748200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:220745400-220747400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:220745800-220747400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:220746800-220748600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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