Variant report

Variant	rs943273
Chromosome Location	chr14:70318637-70318638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11624301	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626145	0.92[ASN][1000 genomes]
rs2148500	0.88[ASN][1000 genomes]
rs72725773	0.85[ASN][1000 genomes]
rs72725776	0.81[ASN][1000 genomes]
rs72725780	0.81[ASN][1000 genomes]
rs72725792	0.88[ASN][1000 genomes]
rs72725793	0.88[ASN][1000 genomes]
rs72725794	0.88[ASN][1000 genomes]
rs72725798	0.88[ASN][1000 genomes]
rs72725801	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70316200-70320000	Enhancers	Fetal Brain Male	brain
2	chr14:70316600-70321800	Weak transcription	Hela-S3	cervix
3	chr14:70317000-70320000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:70317200-70325600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:70317400-70318800	Enhancers	Brain Germinal Matrix	brain
6	chr14:70317400-70319000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:70317400-70319000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:70317400-70319200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:70318000-70320200	Weak transcription	Placenta	Placenta
10	chr14:70318000-70323200	Enhancers	HepG2	liver
11	chr14:70318200-70319200	Weak transcription	Fetal Brain Female	brain
12	chr14:70318200-70320800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links