Variant report

Variant	rs9439942
Chromosome Location	chr1:93361043-93361044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2785608	0.89[EUR][1000 genomes]
rs4130290	0.89[EUR][1000 genomes]
rs4240963	0.89[EUR][1000 genomes]
rs4264009	0.89[EUR][1000 genomes]
rs4442373	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4847224	0.91[AFR][1000 genomes]
rs4847388	0.89[EUR][1000 genomes]
rs501894	0.89[EUR][1000 genomes]
rs56764656	0.89[EUR][1000 genomes]
rs59552478	0.89[EUR][1000 genomes]
rs60842823	0.89[EUR][1000 genomes]
rs61259042	0.89[EUR][1000 genomes]
rs652456	0.89[EUR][1000 genomes]
rs6669107	0.89[EUR][1000 genomes]
rs74101310	0.89[EUR][1000 genomes]
rs74101354	0.89[EUR][1000 genomes]
rs74101356	0.89[EUR][1000 genomes]
rs74101362	0.89[EUR][1000 genomes]
rs7535486	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93350000-93366400	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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