Variant report

Variant	rs944180
Chromosome Location	chr9:116690874-116690875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116646332..116648857-chr9:116689708..116691709,2	K562	blood:
2	chr9:116690832..116694105-chr9:116696668..116699935,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10120883	0.86[CEU][hapmap]
rs10122390	0.90[CEU][hapmap]
rs10448275	0.86[CHB][hapmap]
rs10513222	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10817531	0.81[EUR][1000 genomes]
rs10817532	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10817535	0.85[EUR][1000 genomes]
rs10817539	0.86[CHB][hapmap]
rs10982007	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12343628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13290326	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888161	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2065184	0.83[EUR][1000 genomes]
rs2183364	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2900568	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900569	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4979295	0.96[CEU][hapmap]
rs4979297	0.89[CEU][hapmap]
rs4979298	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7026176	0.86[CEU][hapmap]
rs7029830	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7038501	0.96[CEU][hapmap]
rs7046776	0.86[CHB][hapmap]
rs7047895	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7852787	0.89[CEU][hapmap]
rs7853127	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855811	0.93[CEU][hapmap]
rs7867998	0.86[CHB][hapmap]
rs871806	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs871808	0.91[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs882980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9942970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116675800-116691800	Weak transcription	Lung	lung
2	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
3	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:116686000-116691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
6	chr9:116689600-116691400	ZNF genes & repeats	HSMM	muscle
7	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
8	chr9:116689800-116691800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:116689800-116692000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:116690000-116692400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:116690000-116692400	ZNF genes & repeats	A549	lung
12	chr9:116690400-116691000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
13	chr9:116690600-116691600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:116690800-116692000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:116690800-116692800	Weak transcription	Fetal Lung	lung

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