Variant report

Variant	rs9443037
Chromosome Location	chr6:75144576-75144577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1358880	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes]
rs1853183	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095374	0.93[ASN][1000 genomes]
rs2635109	0.84[ASN][1000 genomes]
rs2756333	0.84[ASN][1000 genomes]
rs2756336	0.84[ASN][1000 genomes]
rs278318	0.84[ASN][1000 genomes]
rs507271	0.83[ASN][1000 genomes]
rs508269	0.84[ASN][1000 genomes]
rs515393	0.84[ASN][1000 genomes]
rs526770	0.84[ASN][1000 genomes]
rs527658	0.84[ASN][1000 genomes]
rs594174	0.84[ASN][1000 genomes]
rs6453754	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6932157	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6933585	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937677	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs694723	0.84[ASN][1000 genomes]
rs716314	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742773	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs795855	0.84[ASN][1000 genomes]
rs9343160	0.89[ASN][1000 genomes]
rs9343166	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343171	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352110	0.80[ASN][1000 genomes]
rs9352111	0.81[ASN][1000 genomes]
rs9352119	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352121	0.89[ASN][1000 genomes]
rs9447201	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886166	chr6:75082067-75155303	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886167	chr6:75102625-75175449	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886168	chr6:75112715-75166715	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9443037	CD109	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75141200-75145200	Enhancers	Colon Smooth Muscle	Colon
2	chr6:75144200-75144800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:75144200-75145000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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