Variant report

Variant	rs944767
Chromosome Location	chr6:12788029-12788030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10948235	1.00[CHB][hapmap]
rs10948244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10948247	1.00[CHB][hapmap]
rs12523719	1.00[CHB][hapmap]
rs12528956	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13196135	1.00[ASN][1000 genomes]
rs13217579	1.00[CHB][hapmap]
rs1332840	1.00[CHB][hapmap]
rs1332841	1.00[CHB][hapmap]
rs1360579	1.00[CHB][hapmap]
rs1412740	1.00[CHB][hapmap]
rs1412741	1.00[CHB][hapmap]
rs1412744	1.00[CHB][hapmap]
rs1412751	1.00[CHB][hapmap]
rs1412752	1.00[CHB][hapmap]
rs1412753	1.00[CHB][hapmap]
rs1572000	1.00[CHB][hapmap]
rs1572002	1.00[CHB][hapmap]
rs17617207	1.00[CHB][hapmap]
rs17679417	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes]
rs17679501	1.00[CHB][hapmap]
rs1953089	1.00[CHB][hapmap]
rs2327619	1.00[CHB][hapmap]
rs4711857	1.00[CHB][hapmap]
rs4711858	1.00[CHB][hapmap]
rs4714866	1.00[CHB][hapmap]
rs4714870	1.00[CHB][hapmap]
rs4714946	1.00[CHB][hapmap]
rs59402659	0.81[AMR][1000 genomes]
rs6458461	1.00[CHB][hapmap]
rs6458503	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs6909834	1.00[CHB][hapmap]
rs6916334	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6917493	1.00[CHB][hapmap]
rs6924150	1.00[CHB][hapmap]
rs6938417	1.00[CHB][hapmap]
rs6941422	1.00[CHB][hapmap]
rs6941624	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs7748950	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7757205	1.00[CHB][hapmap]
rs7757858	1.00[CHB][hapmap]
rs7760140	1.00[CHB][hapmap]
rs7760286	1.00[CHB][hapmap]
rs7770745	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7771962	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs7776079	1.00[CHB][hapmap]
rs883947	1.00[CHB][hapmap]
rs9296464	1.00[CHB][hapmap]
rs9296494	1.00[CHB][hapmap]
rs9395190	1.00[CHB][hapmap]
rs944766	1.00[CHB][hapmap]
rs9463106	1.00[CHB][hapmap]
rs9463110	1.00[CHB][hapmap]
rs9463134	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9463187	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9472551	1.00[CHB][hapmap]
rs9472777	1.00[CHB][hapmap]
rs9472786	1.00[CHB][hapmap]
rs950720	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12786000-12790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12787800-12788200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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