Variant report

Variant	rs9458899
Chromosome Location	chr6:164199739-164199740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:164197060..164200042-chr6:164203079..164205559,3	K562	blood:
2	chr6:164154250..164155922-chr6:164197149..164199809,2	K562	blood:
3	chr6:164194495..164199881-chr6:164208039..164212902,6	K562	blood:
4	chr6:164158813..164160898-chr6:164198628..164201364,2	MCF-7	breast:
5	chr6:164197559..164200585-chr6:164208850..164211951,4	K562	blood:
6	chr6:164197787..164199861-chr6:164232606..164234637,2	K562	blood:
7	chr6:164188709..164190897-chr6:164199271..164201440,2	K562	blood:
8	chr6:164197788..164200009-chr6:164223920..164225941,2	K562	blood:

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10945921	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945924	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12199352	0.82[ASN][1000 genomes]
rs1555229	0.86[ASN][1000 genomes]
rs16895332	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2321977	0.92[ASN][1000 genomes]
rs2321978	0.89[ASN][1000 genomes]
rs2321979	0.89[ASN][1000 genomes]
rs4709767	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4709768	0.89[ASN][1000 genomes]
rs4709769	0.88[ASN][1000 genomes]
rs62435339	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62435340	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62436876	0.85[ASN][1000 genomes]
rs62436877	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62436878	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62436879	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6455921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6455922	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914115	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6914628	0.92[ASN][1000 genomes]
rs6934397	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6935481	0.92[ASN][1000 genomes]
rs6938579	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7740670	0.90[ASN][1000 genomes]
rs7742306	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7759487	0.85[ASN][1000 genomes]
rs7765512	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs876738	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9295230	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9355441	0.89[ASN][1000 genomes]
rs9356147	0.82[ASN][1000 genomes]
rs9365618	0.92[ASN][1000 genomes]
rs9365622	0.85[ASN][1000 genomes]
rs9456886	0.92[ASN][1000 genomes]
rs9458901	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186000-164200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
3	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:164197400-164200600	Weak transcription	Brain Germinal Matrix	brain
5	chr6:164197600-164199800	Enhancers	Psoas Muscle	Psoas
6	chr6:164197600-164199800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:164197600-164201400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:164197600-164201800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:164198200-164199800	Enhancers	HSMMtube	muscle
10	chr6:164198400-164199800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:164198400-164201600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:164198600-164201600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:164199400-164201600	Weak transcription	Fetal Stomach	stomach
14	chr6:164199400-164203600	Weak transcription	Left Ventricle	heart
15	chr6:164199400-164203600	Weak transcription	Right Ventricle	heart
16	chr6:164199600-164200000	Enhancers	Fetal Heart	heart
17	chr6:164199600-164200400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:164199600-164202000	Enhancers	K562	blood

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