Variant report
| Variant | rs9464215 |
|---|---|
| Chromosome Location | chr6:55104607-55104608 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12055777 | 0.91[ASN][1000 genomes] |
| rs12055778 | 0.91[ASN][1000 genomes] |
| rs3134711 | 0.90[EUR][1000 genomes] |
| rs4074181 | 0.87[ASN][1000 genomes] |
| rs56843381 | 0.91[ASN][1000 genomes] |
| rs62416801 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62416821 | 0.87[ASN][1000 genomes] |
| rs6930360 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7741664 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9349771 | 0.91[ASN][1000 genomes] |
| rs9349772 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9349773 | 0.87[ASN][1000 genomes] |
| rs9349774 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9357850 | 0.91[ASN][1000 genomes] |
| rs9357851 | 0.91[ASN][1000 genomes] |
| rs9357852 | 0.90[ASN][1000 genomes] |
| rs9357853 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9357854 | 0.87[ASN][1000 genomes] |
| rs9357855 | 0.87[ASN][1000 genomes] |
| rs9367625 | 0.89[ASN][1000 genomes] |
| rs9367626 | 0.87[ASN][1000 genomes] |
| rs9367627 | 0.87[ASN][1000 genomes] |
| rs9370407 | 0.87[ASN][1000 genomes] |
| rs9382471 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9382472 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9396069 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9396070 | 0.91[ASN][1000 genomes] |
| rs9396074 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9396075 | 0.87[ASN][1000 genomes] |
| rs9475211 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9475214 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016461 | chr6:55038131-55129663 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:55104200-55109000 | Weak transcription | Fetal Intestine Small | intestine |
