Variant report

Variant	rs9464338
Chromosome Location	chr6:55954321-55954322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28448399	1.00[AFR][1000 genomes]
rs9296826	1.00[AFR][1000 genomes]
rs9464340	1.00[AFR][1000 genomes]
rs9464344	1.00[AFR][1000 genomes]
rs9475489	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55929000-55956200	Weak transcription	Aorta	Aorta
3	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
4	chr6:55952600-55955800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:55952800-55954800	Weak transcription	Right Ventricle	heart
6	chr6:55952800-55955800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:55952800-55956000	Weak transcription	HUVEC	blood vessel
8	chr6:55953800-55957600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:55954000-55955200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:55954000-55955600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:55954000-55955800	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:55954000-55956000	Weak transcription	Left Ventricle	heart
13	chr6:55954000-55956200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:55954000-55956200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:55954000-55956600	Active TSS	Fetal Heart	heart
16	chr6:55954000-55957600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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