Variant report

Variant	rs946468
Chromosome Location	chr1:216836576-216836577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11117646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11117649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12094429	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043436	0.88[CHB][hapmap];0.80[CHD][hapmap]
rs17043466	0.88[CHB][hapmap]
rs1953521	0.82[YRI][hapmap]
rs2066108	0.88[CHB][hapmap]
rs2789721	0.88[CHB][hapmap];0.80[CHD][hapmap]
rs2789722	0.86[CHB][hapmap]
rs2813666	0.88[CHB][hapmap]
rs2813711	0.88[CHB][hapmap];0.80[CHD][hapmap]
rs2820881	0.85[CHB][hapmap]
rs2820882	0.88[CHB][hapmap];0.80[CHD][hapmap]
rs2999503	0.88[CHB][hapmap];0.80[CHD][hapmap]
rs58065948	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695570	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7538424	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543361	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs946468	LQK1	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216833800-216838200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
7	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
8	chr1:216835800-216836800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:216836000-216836600	Enhancers	Placenta	Placenta
11	chr1:216836000-216839400	Weak transcription	Fetal Intestine Small	intestine

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