Variant report

Variant	rs9473216
Chromosome Location	chr6:13019862-13019863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11970697	1.00[EUR][1000 genomes]
rs1537339	1.00[EUR][1000 genomes]
rs1889063	1.00[EUR][1000 genomes]
rs6458615	1.00[EUR][1000 genomes]
rs6900887	1.00[EUR][1000 genomes]
rs6903869	1.00[EUR][1000 genomes]
rs6906831	1.00[EUR][1000 genomes]
rs6909931	1.00[EUR][1000 genomes]
rs6910469	1.00[EUR][1000 genomes]
rs6910939	1.00[EUR][1000 genomes]
rs6911906	1.00[EUR][1000 genomes]
rs6922653	1.00[EUR][1000 genomes]
rs6923943	1.00[EUR][1000 genomes]
rs6936929	1.00[EUR][1000 genomes]
rs6942132	1.00[EUR][1000 genomes]
rs73368123	1.00[EUR][1000 genomes]
rs73368194	1.00[EUR][1000 genomes]
rs7749076	1.00[EUR][1000 genomes]
rs7767573	1.00[EUR][1000 genomes]
rs7769935	1.00[EUR][1000 genomes]
rs9463350	1.00[EUR][1000 genomes]
rs9463542	1.00[EUR][1000 genomes]
rs9473155	1.00[EUR][1000 genomes]
rs9473675	1.00[EUR][1000 genomes]
rs9473677	1.00[EUR][1000 genomes]
rs9473688	1.00[EUR][1000 genomes]
rs9473689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13014600-13020200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:13015000-13026000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:13015000-13026400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13015200-13024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:13015400-13024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:13015600-13023400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:13015600-13027600	Weak transcription	Right Atrium	heart
8	chr6:13015800-13024600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:13015800-13024600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:13015800-13029000	Weak transcription	Pancreas	Pancrea
11	chr6:13016000-13020200	Weak transcription	Right Ventricle	heart
12	chr6:13016200-13021000	Weak transcription	Aorta	Aorta
13	chr6:13016200-13025800	Weak transcription	Fetal Brain Female	brain
14	chr6:13016200-13025800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:13016400-13023600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:13016400-13023800	Weak transcription	Brain Anterior Caudate	brain
17	chr6:13018800-13020800	Enhancers	Fetal Heart	heart
18	chr6:13018800-13023800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:13019200-13020000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:13019200-13020600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links