Variant report

Variant	rs9475005
Chromosome Location	chr6:54650403-54650404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54648395..54650437-chr6:54710257..54713518,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10223546	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10223849	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10440848	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10456688	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948852	0.94[ASN][1000 genomes]
rs10948853	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948862	0.91[CEU][hapmap]
rs12191386	0.87[CEU][hapmap]
rs12194667	0.81[CEU][hapmap]
rs12195438	0.92[CEU][hapmap]
rs12196314	0.90[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12199827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203709	0.92[CEU][hapmap]
rs12205372	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12207559	0.92[CEU][hapmap]
rs12216039	0.82[CEU][hapmap]
rs12216186	0.94[ASN][1000 genomes]
rs13195757	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1393779	0.84[CEU][hapmap]
rs1567164	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1827513	0.98[ASN][1000 genomes]
rs2174145	0.80[CEU][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs34713378	0.85[EUR][1000 genomes]
rs4712071	0.94[ASN][1000 genomes]
rs4712075	0.92[CEU][hapmap]
rs4715480	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715481	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715482	0.93[ASN][1000 genomes]
rs4715484	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58988305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62412605	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6908940	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916681	0.83[CEU][hapmap];0.88[AFR][1000 genomes]
rs6918226	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922162	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6922543	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939992	0.93[ASN][1000 genomes]
rs72957572	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7452200	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296768	0.94[ASN][1000 genomes]
rs9296769	0.81[CEU][hapmap]
rs9464138	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464139	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474997	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9475001	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs9475004	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs9475006	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475011	0.95[ASN][1000 genomes]
rs9475013	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475017	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475021	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475029	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54649000-54652800	Weak transcription	Fetal Lung	lung

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