Variant report

Variant	rs9475047
Chromosome Location	chr6:54721084-54721085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54582865..54585119-chr6:54718425..54721186,2	MCF-7	breast:
2	chr6:54718981..54722041-chr6:54724023..54729682,8	MCF-7	breast:
3	chr6:54718921..54722891-chr6:54723074..54726787,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12196439	1.00[ASN][1000 genomes]
rs12207828	1.00[ASN][1000 genomes]
rs13190743	1.00[ASN][1000 genomes]
rs13192654	1.00[ASN][1000 genomes]
rs13212537	1.00[ASN][1000 genomes]
rs13218354	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220607	1.00[ASN][1000 genomes]
rs1395638	1.00[ASN][1000 genomes]
rs1395639	1.00[ASN][1000 genomes]
rs17682062	1.00[ASN][1000 genomes]
rs239782	1.00[ASN][1000 genomes]
rs239784	1.00[ASN][1000 genomes]
rs239785	1.00[ASN][1000 genomes]
rs34317450	1.00[ASN][1000 genomes]
rs34784567	1.00[ASN][1000 genomes]
rs35242257	1.00[ASN][1000 genomes]
rs35332422	1.00[ASN][1000 genomes]
rs35355591	1.00[ASN][1000 genomes]
rs35601036	1.00[ASN][1000 genomes]
rs35776136	1.00[ASN][1000 genomes]
rs6929628	1.00[ASN][1000 genomes]
rs6930882	1.00[ASN][1000 genomes]
rs6936719	1.00[ASN][1000 genomes]
rs71560861	1.00[ASN][1000 genomes]
rs71560863	1.00[ASN][1000 genomes]
rs71560865	1.00[ASN][1000 genomes]
rs71560870	1.00[ASN][1000 genomes]
rs71560871	1.00[ASN][1000 genomes]
rs71560872	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464150	0.86[AFR][1000 genomes]
rs9464152	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474993	1.00[ASN][1000 genomes]
rs9474994	1.00[ASN][1000 genomes]
rs9474998	1.00[ASN][1000 genomes]
rs9474999	1.00[ASN][1000 genomes]
rs9475000	1.00[ASN][1000 genomes]
rs9475049	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54712600-54725000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:54713200-54725600	Weak transcription	Gastric	stomach
3	chr6:54713400-54726400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
5	chr6:54720200-54721200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:54720200-54721400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:54720400-54721200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:54720400-54721200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:54720400-54721400	Enhancers	Stomach Mucosa	stomach
10	chr6:54720400-54722200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:54720400-54723000	Enhancers	Fetal Intestine Large	intestine
12	chr6:54720400-54723200	Enhancers	Fetal Intestine Small	intestine
13	chr6:54720800-54721200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:54720800-54721200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:54720800-54721200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:54720800-54721200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:54720800-54721200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:54720800-54721200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:54720800-54721200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:54720800-54721200	Enhancers	Fetal Kidney	kidney
21	chr6:54720800-54721200	Transcr. at gene 5' and 3'	NHEK	skin
22	chr6:54720800-54721400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:54720800-54721400	Genic enhancers	HMEC	breast
24	chr6:54720800-54722400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:54720800-54722400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:54720800-54722600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:54721000-54721200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:54721000-54721400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:54721000-54721400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:54721000-54721600	Enhancers	Placenta Amnion	Placenta Amnion

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