Variant report

Variant	rs9475206
Chromosome Location	chr6:55096952-55096953
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10948909	1.00[CHB][hapmap]
rs3122167	0.86[YRI][hapmap]
rs3134711	0.83[YRI][hapmap]
rs4311511	0.80[YRI][hapmap]
rs4631286	0.84[YRI][hapmap]
rs6912059	1.00[CHB][hapmap]
rs7755590	1.00[CHB][hapmap]
rs7771240	0.96[YRI][hapmap]
rs9349772	0.96[YRI][hapmap]
rs9349774	0.96[YRI][hapmap]
rs9357849	0.86[CEU][hapmap];0.84[YRI][hapmap]
rs9367624	0.85[CEU][hapmap];0.84[YRI][hapmap]
rs9396069	0.97[YRI][hapmap]
rs9475208	0.96[YRI][hapmap]
rs9475210	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475214	0.97[YRI][hapmap]
rs958626	1.00[CHB][hapmap]
rs991736	1.00[CHB][hapmap]
rs9968982	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55096600-55097200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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