Variant report

Variant	rs9475248
Chromosome Location	chr6:55198386-55198387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12528560	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12530406	0.89[JPT][hapmap]
rs12665239	1.00[EUR][1000 genomes]
rs1354202	0.83[JPT][hapmap]
rs17756843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2292040	1.00[EUR][1000 genomes]
rs4573074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715531	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6908217	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6936185	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7753994	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs883572	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367630	1.00[EUR][1000 genomes]
rs937636	0.81[AMR][1000 genomes]
rs937638	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs991735	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885903	chr6:55142337-55344782	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1015161	chr6:55149388-55225072	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv1029279	chr6:55152655-55222696	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv1034005	chr6:55152655-55225072	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1034960	chr6:55152655-55243149	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv462947	chr6:55156812-55226013	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv603162	chr6:55156812-55226013	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv885904	chr6:55156812-55344782	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1021982	chr6:55164510-55213989	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv538226	chr6:55164510-55213989	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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