Variant report

Variant	rs9475484
Chromosome Location	chr6:55819181-55819182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55309906..55311058-chr6:55817976..55819297,5	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11965332	1.00[EUR][1000 genomes]
rs35338969	1.00[EUR][1000 genomes]
rs57942055	1.00[EUR][1000 genomes]
rs59302865	1.00[EUR][1000 genomes]
rs6459121	1.00[EUR][1000 genomes]
rs6902463	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922937	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6925547	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6938871	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73442195	1.00[EUR][1000 genomes]
rs73444263	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73444285	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73446214	1.00[EUR][1000 genomes]
rs73455141	1.00[EUR][1000 genomes]
rs73457035	1.00[EUR][1000 genomes]
rs7453182	1.00[EUR][1000 genomes]
rs9464312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464313	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464314	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9475483	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9885849	0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55816600-55820600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:55818400-55822200	Weak transcription	Fetal Lung	lung
3	chr6:55818400-55823000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:55818600-55819400	Weak transcription	Fetal Heart	heart
5	chr6:55818600-55822600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:55818600-55822800	Weak transcription	NHDF-Ad	bronchial
7	chr6:55818600-55827600	Weak transcription	Colon Smooth Muscle	Colon

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