Variant report

Variant	rs9475605
Chromosome Location	chr6:56056755-56056756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10046394	1.00[AMR][1000 genomes]
rs10223337	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464347	1.00[AMR][1000 genomes]
rs9464361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464363	1.00[AMR][1000 genomes]
rs9464364	1.00[AMR][1000 genomes]
rs9464365	1.00[AMR][1000 genomes]
rs9475573	1.00[AMR][1000 genomes]
rs9475574	1.00[AMR][1000 genomes]
rs9475579	1.00[AMR][1000 genomes]
rs9475582	1.00[AMR][1000 genomes]
rs9475585	1.00[AMR][1000 genomes]
rs9475588	1.00[AMR][1000 genomes]
rs9475590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475597	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475600	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475601	1.00[AMR][1000 genomes]
rs9475602	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475603	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475609	1.00[AMR][1000 genomes]
rs9475613	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475625	1.00[AMR][1000 genomes]
rs9475629	0.87[AFR][1000 genomes]
rs9475630	1.00[AMR][1000 genomes]
rs9475635	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475636	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475638	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56053400-56058600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56055400-56058600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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