Variant report

Variant	rs9475619
Chromosome Location	chr6:56066875-56066876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10046394	0.91[AFR][1000 genomes]
rs10223337	0.91[AFR][1000 genomes]
rs12333329	0.91[AFR][1000 genomes]
rs9464347	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9464361	0.91[AFR][1000 genomes]
rs9464363	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9464364	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9464365	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9475573	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9475574	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475576	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475579	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475582	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475585	0.91[AFR][1000 genomes]
rs9475588	0.91[AFR][1000 genomes]
rs9475590	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475592	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9475597	0.91[AFR][1000 genomes]
rs9475600	0.87[AFR][1000 genomes]
rs9475601	1.00[AFR][1000 genomes]
rs9475602	0.91[AFR][1000 genomes]
rs9475603	0.91[AFR][1000 genomes]
rs9475609	1.00[AFR][1000 genomes]
rs9475613	0.91[AFR][1000 genomes]
rs9475614	0.91[AFR][1000 genomes]
rs9475618	0.91[AFR][1000 genomes]
rs9475625	0.84[AFR][1000 genomes]
rs9475629	0.91[AFR][1000 genomes]
rs9475630	1.00[AFR][1000 genomes]
rs9475635	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9475636	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9475638	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56065200-56069000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links