Variant report
| Variant | rs9475629 |
|---|---|
| Chromosome Location | chr6:56072130-56072131 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10046394 | 0.83[AFR][1000 genomes] |
| rs10223337 | 1.00[AFR][1000 genomes] |
| rs12333329 | 1.00[AFR][1000 genomes] |
| rs9464347 | 0.83[AFR][1000 genomes] |
| rs9464361 | 1.00[AFR][1000 genomes] |
| rs9464363 | 0.88[AFR][1000 genomes] |
| rs9464364 | 0.88[AFR][1000 genomes] |
| rs9464365 | 0.88[AFR][1000 genomes] |
| rs9475574 | 0.83[AFR][1000 genomes] |
| rs9475576 | 0.83[AFR][1000 genomes] |
| rs9475579 | 0.83[AFR][1000 genomes] |
| rs9475582 | 0.83[AFR][1000 genomes] |
| rs9475585 | 0.83[AFR][1000 genomes] |
| rs9475588 | 0.83[AFR][1000 genomes] |
| rs9475590 | 1.00[AFR][1000 genomes] |
| rs9475592 | 0.91[AFR][1000 genomes] |
| rs9475597 | 1.00[AFR][1000 genomes] |
| rs9475600 | 0.96[AFR][1000 genomes] |
| rs9475601 | 0.91[AFR][1000 genomes] |
| rs9475602 | 1.00[AFR][1000 genomes] |
| rs9475603 | 1.00[AFR][1000 genomes] |
| rs9475605 | 0.87[AFR][1000 genomes] |
| rs9475609 | 0.91[AFR][1000 genomes] |
| rs9475613 | 1.00[AFR][1000 genomes] |
| rs9475614 | 1.00[AFR][1000 genomes] |
| rs9475618 | 1.00[AFR][1000 genomes] |
| rs9475619 | 0.91[AFR][1000 genomes] |
| rs9475625 | 0.92[AFR][1000 genomes] |
| rs9475630 | 0.91[AFR][1000 genomes] |
| rs9475635 | 0.96[AFR][1000 genomes] |
| rs9475636 | 0.96[AFR][1000 genomes] |
| rs9475638 | 0.96[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885911 | chr6:55789704-56143231 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:56064000-56090800 | Weak transcription | Fetal Lung | lung |
